Jatropha Genome Database

JcCB0282311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0282311.10 + phase: 0 
         (97 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011476001 assembled CDS                                        80   2e-16
GSVIVT01011475001 assembled CDS                                        48   1e-06

>GSVIVT01011476001 assembled CDS
          Length = 159

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 39/42 (92%)

Query: 24 MVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          +V M+P+VSATRWTVG N GW+TNVNYT+WA+DKHFYNGDWL
Sbjct: 4  VVLMLPDVSATRWTVGGNQGWSTNVNYTVWAKDKHFYNGDWL 45


>GSVIVT01011475001 assembled CDS
          Length = 176

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query: 38 VGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          VG   GW  NVNYT WA++KHFY GDWL
Sbjct: 40 VGGKQGWGPNVNYTEWAKNKHFYVGDWL 67