Jatropha Genome Database

JcCB0281811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0281811.20 + phase: 0 
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035352001 assembled CDS                                       181   4e-47
GSVIVT01014564001 assembled CDS                                       175   3e-45
GSVIVT01016886001 assembled CDS                                       171   7e-44

>GSVIVT01035352001 assembled CDS
          Length = 122

 Score =  181 bits (460), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 100/122 (81%), Gaps = 4/122 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A    AKHGCA+YKQL+E+NKQYIQ PPTVE+C LL+ QL +TRLA
Sbjct: 1   MASKLVQLQSKASQASQFVAKHGCAYYKQLMEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYEAFWKEL+ +K L K++ EM +E AG+ ALFG+ECFAWF  GEI+GRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELDCVKQLWKNRQEMKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 117 YV 118
           YV
Sbjct: 121 YV 122


>GSVIVT01014564001 assembled CDS
          Length = 122

 Score =  175 bits (444), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 101/122 (82%), Gaps = 4/122 (3%)

Query: 1   MASKLPQLQSKLHSAA----KHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQSK   A+    KHGCA++KQLLE+NKQY+Q PPTVE+C LLA QL +TRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVVKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYE+FWKEL+ +K++ K++ E+ +E AG+ ALFG+EC+AWF  GEI+GRGFTFTGY
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTGY 120

Query: 117 YV 118
           YV
Sbjct: 121 YV 122


>GSVIVT01016886001 assembled CDS
          Length = 122

 Score =  171 bits (433), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 99/122 (81%), Gaps = 4/122 (3%)

Query: 1   MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
           MASKL QLQ+K   A    AKH  ++YK+LLEENKQYIQ+PPT+++C LLA QL  TRLA
Sbjct: 1   MASKLVQLQTKACKASQLVAKHANSYYKELLEENKQYIQDPPTIQKCDLLAKQLFATRLA 60

Query: 57  SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
           SIP RYEAFWKEL  +KNL K++ E+ +E AG+ ALFG+EC+AWF GGEI+GRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELGYIKNLWKNRQELKVEDAGIAALFGLECYAWFCGGEIVGRGFTFTGY 120

Query: 117 YV 118
           YV
Sbjct: 121 YV 122