Jatropha Genome Database

JcCB0280701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0280701.10 + phase: 0 
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028578001 assembled CDS                                       248   2e-66

>GSVIVT01028578001 assembled CDS
          Length = 287

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 145/195 (74%), Gaps = 33/195 (16%)

Query: 2   EPEIITDKTQMRNWSRAIRSQGKTIALVPTMGYLHHGHLSLVEEAKKLANVIVVSIYLNP 61
           E EII DK +MR WSR +RSQGKTI LVPTMGYLH GH+SL++EA K  ++IVVSIY+NP
Sbjct: 8   EAEIIRDKDEMRRWSRRMRSQGKTIGLVPTMGYLHQGHISLIKEAHKHTDLIVVSIYVNP 67

Query: 62  GQFSPSEDLSTYPSDFNGDIMKLMSVPGGVNAVFHPQNLYDYEIDRKNENYNVNFRDSGD 121
           GQF+PSEDLSTYPSDF+GD+ KLM+VPGGV+AVFHP NLYDY                  
Sbjct: 68  GQFAPSEDLSTYPSDFHGDLQKLMAVPGGVDAVFHPHNLYDY------------------ 109

Query: 122 NCKGVVSCVEEKGLGHETWVRVQRLEKGLCGKSRPVFFRGVATVVTKLFNIVEPDFAVFG 181
                            TWVRV+RLEK +CGKSRPVFFRGVAT+V+KLFNIVEPD AVFG
Sbjct: 110 ---------------GSTWVRVERLEKSMCGKSRPVFFRGVATIVSKLFNIVEPDVAVFG 154

Query: 182 KKDYQQWRIIQRMVR 196
           KKDYQQWRII RMVR
Sbjct: 155 KKDYQQWRIISRMVR 169