Jatropha Genome Database

JcCB0280191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0280191.10 + phase: 0 /pseudo/partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003606001 assembled CDS                                        67   2e-12
GSVIVT01008311001 assembled CDS                                        67   3e-12
GSVIVT01003603001 assembled CDS                                        62   1e-10

>GSVIVT01003606001 assembled CDS
          Length = 255

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 59  LLMGLKDVAVSSGSACTSASLEPSYVLRALG----------**GYGAYFNKV---RHWEV 105
           LLMGLK+VAVSSGSACTSASLEPSYVLRALG            G G +  +    R  E+
Sbjct: 164 LLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEIDRAVEL 223

Query: 106 YHRRGD**GH*AYSEAGGKVKRNEPAL*DGEGGIDIKQIQWAQH 149
             ++ +            K++   P     + GIDIK IQWAQH
Sbjct: 224 TVQQVE------------KLREMSPLYEMVKEGIDIKSIQWAQH 255


>GSVIVT01008311001 assembled CDS
          Length = 322

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 56/104 (53%), Gaps = 25/104 (24%)

Query: 59  LLMGLKDVAVSSGSACTSASLEPSYVLRALG----------**GYGAYFNKV---RHWEV 105
           LLMGLK+VAVSSGSACTSASLEPSYVLRALG            G G +       R  E+
Sbjct: 231 LLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTDAEIDRAVEL 290

Query: 106 YHRRGD**GH*AYSEAGGKVKRNEPAL*DGEGGIDIKQIQWAQH 149
             ++ +            K++   P     + GIDIK IQWAQH
Sbjct: 291 TVQQVE------------KLREMSPLYEMVKEGIDIKSIQWAQH 322


>GSVIVT01003603001 assembled CDS
          Length = 1088

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 59  LLMGLKDVAVSSGSACTSASLEPSYVLRALG 89
           LLMGLK+VAVSSGSACTSASLEPSYVLRALG
Sbjct: 257 LLMGLKEVAVSSGSACTSASLEPSYVLRALG 287