Jatropha Genome Database

JcCB0279751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279751.10 - phase: 0 
         (237 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027582001 assembled CDS                                       232   1e-61
GSVIVT01037628001 assembled CDS                                        97   5e-21
GSVIVT01015331001 assembled CDS                                        72   2e-13
GSVIVT01013770001 assembled CDS                                        54   7e-08

>GSVIVT01027582001 assembled CDS
          Length = 418

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 135/162 (83%), Gaps = 4/162 (2%)

Query: 35  KLHDHYAFRPPPSLSP-QEPD-NPNPTTRKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRY 92
           +L DHY+F+ P  +SP Q P+ NP P+T+KKQKP YRPPS+LDRTGKKP  SDLPFDFRY
Sbjct: 37  RLLDHYSFKSP--VSPFQNPNPNPEPSTKKKQKPPYRPPSSLDRTGKKPLRSDLPFDFRY 94

Query: 93  SYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVCAPAVDPKVKSLDGTDDPNLEEKRKL 152
           SYTESS +VRPIGLREPKYSPFGP  LDR WTGVCAPAVDPKV+S+DG +DP LEEKR+ 
Sbjct: 95  SYTESSPAVRPIGLREPKYSPFGPGLLDREWTGVCAPAVDPKVRSVDGKEDPKLEEKRRR 154

Query: 153 MREKIQGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNL 194
           MREK  G+PLT AERKILV +CQR++TKRQINLG   +  N+
Sbjct: 155 MREKTLGEPLTAAERKILVEKCQRHRTKRQINLGRDGLTHNM 196


>GSVIVT01037628001 assembled CDS
          Length = 343

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 24/138 (17%)

Query: 67  LYRPPSTL-----DRTGKK-PTHSDLPFDFRYSYTESSQSVRPIGLRE-PKYSPFGPDRL 119
           ++ PP +L     D  G+  P  SDLPFDFRYSY+E++ SV PIG RE P++SPFGP RL
Sbjct: 38  IHDPPFSLTSNPKDNKGQTFPFKSDLPFDFRYSYSEANPSVHPIGFREPPRFSPFGPARL 97

Query: 120 DRSWTGVCAPA---VDPKVKSLDGTDDPNLEEKRKLMREKIQGDPLTNAERKILVAQCQR 176
           DR WTG  APA   VDP V S          E+RK     + G+PL+  E   LV + + 
Sbjct: 98  DRKWTGTAAPAEEVVDPAVVS----------EQRK----AVLGEPLSEDEIAELVERYRH 143

Query: 177 NKTKRQINLGMVFVLFNL 194
           +   RQINLG   V  N+
Sbjct: 144 SDCSRQINLGKGGVTHNM 161


>GSVIVT01015331001 assembled CDS
          Length = 723

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 86  LPFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVC-APAVDPKVKSLDGTDDP 144
           +PF+ RYSYTE+ + V+PI LREP + PFGPD + R WTG    P    K+K  D    P
Sbjct: 150 VPFELRYSYTETPK-VKPIALREPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLP 208

Query: 145 NLEEKR------------------KLMREKIQGDPLTNAERKILVAQCQRNKTKRQINLG 186
              +KR                     RE+I G+PLT  E K LV  C   K+KRQ+N+G
Sbjct: 209 PPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCV--KSKRQLNMG 266

Query: 187 MVFVLFNLSILGTVYA 202
              +  N+  L  ++A
Sbjct: 267 RDGLTHNM--LDNIHA 280


>GSVIVT01013770001 assembled CDS
          Length = 561

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 22/127 (17%)

Query: 87  PFDFRYSYTESSQSVRPIGLREPKYSPFGPDRLDRSWTGVC--------APAVD------ 132
           PF+F++SY+E+ ++ +P+ +REP + PF P  + R WTG           P  D      
Sbjct: 103 PFEFQFSYSETPKA-KPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 161

Query: 133 PKVKSLDGTDDPNLEEKRKL-----MREKIQGDPLTNAERKILVAQCQRNKTKRQINLGM 187
           P  K +   + P      K       RE+I G+PL+ AE ++LV     +   RQ+NLG 
Sbjct: 162 PGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSH--NRQVNLGR 219

Query: 188 VFVLFNL 194
             +  N+
Sbjct: 220 DGLTHNM 226