Jatropha Genome Database

JcCB0279231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279231.10 - phase: 0 /pseudo
         (432 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027658001 assembled CDS                                       280   1e-75
GSVIVT01014172001 assembled CDS                                       257   6e-69
GSVIVT01024581001 assembled CDS                                       232   3e-61
GSVIVT01021261001 assembled CDS                                       221   5e-58
GSVIVT01024812001 assembled CDS                                       185   3e-47
GSVIVT01025319001 assembled CDS                                        65   4e-11

>GSVIVT01027658001 assembled CDS
          Length = 286

 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/227 (63%), Positives = 161/227 (70%), Gaps = 57/227 (25%)

Query: 202 NGYYPVDLTPELFMTAVEVAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPDVVYAKRAH 261
           NG++PVDLTP+LF++ VE AFKAIHDFSKPLINMMKAAGWDLDAAANSIEP+VVYAKRAH
Sbjct: 80  NGFFPVDLTPDLFISVVEAAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPNVVYAKRAH 139

Query: 262 KKYAFESHICQRMFSGFQQESFSIKSDNVMVSRESFFHQYLALREMDPLDVLGQDPDSDF 321
           KKYAFESHICQRMFSGFQ ESFSIKSDN+                               
Sbjct: 140 KKYAFESHICQRMFSGFQHESFSIKSDNLT------------------------------ 169

Query: 322 GKFCRSKYLVVVHPKMEGSFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYS 381
               R+  +   HP+                      TPFYQAFLKLAKSIWLLHRLAYS
Sbjct: 170 ----RNYVMGGGHPR----------------------TPFYQAFLKLAKSIWLLHRLAYS 203

Query: 382 FDPNVKVFQVRRGSEFSEVYMESIVKNLILDE-NQKPRVGLMVMPGF 427
           FDPNVKVFQV+RGSEFSEVYMES+VKNL++DE ++KP+VGLMVMPGF
Sbjct: 204 FDPNVKVFQVKRGSEFSEVYMESVVKNLVMDESDEKPKVGLMVMPGF 250



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 31/33 (93%)

Query: 92  EKIQAADKLVISELKNLSELKHFYRENYPKPVC 124
           +KIQAADKLVISELKNLSELKHFYRE  PKP+C
Sbjct: 43  DKIQAADKLVISELKNLSELKHFYREKNPKPIC 75


>GSVIVT01014172001 assembled CDS
          Length = 419

 Score =  257 bits (657), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 140/338 (41%), Positives = 199/338 (58%), Gaps = 26/338 (7%)

Query: 94  IQAADKLVISELKNLSELKHFYRENYPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVKKF 153
           IQ+AD++V+SELKNLSELK  Y +    P   SP+ +   AEIQEQ+SLLKTYE+M KK 
Sbjct: 88  IQSADQIVVSELKNLSELKRCYLKKQFDP---SPERTLCLAEIQEQKSLLKTYEIMRKKL 144

Query: 154 QSEIQNKDSXXXXXXXXXXXATQKRAKLEKNLKLRGLSTKXXXXXXXXNGYYPVDLTPEL 213
           + +++ KDS             ++   LEK L                +  +   ++P  
Sbjct: 145 ECQMKLKDSEITFLREKLEDCHKQNKSLEKRLNPSA-------HLSVLDNLHLSGISPSH 197

Query: 214 FMTAVEVAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPDVVYAKRAHKKYAFESHICQR 273
           F+T ++   K+I  F + +IN M+++GWD++AAA +I+P VV+ K  H+  AFES +C+ 
Sbjct: 198 FITVLQHTVKSIRSFVRLMINEMESSGWDINAAAAAIQPSVVFLKATHRCLAFESFVCRE 257

Query: 274 MFSGFQQESFSIKSDNVMVSRESFFHQYLALREMDPLDVLGQDPDSDFGKFCRSKYLVVV 333
           MF  F   +FS+             ++++ L+     + L Q P S FGKFCR+KYL +V
Sbjct: 258 MFDSFHFPNFSLP------------NEFIKLKSTRVKEYLAQKPKSTFGKFCRAKYLKLV 305

Query: 334 HPKMEGSFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQVRR 393
           HPKME SFFGNL QR+ V  G  P TPF+ +F ++AK +WLLH LA+SF+P  K+FQV +
Sbjct: 306 HPKMESSFFGNLSQRSIVNSGKFPDTPFFTSFSEMAKRVWLLHCLAFSFNPEAKIFQVNK 365

Query: 394 GSEFSEVYMESIVKNLILDENQKP----RVGLMVMPGF 427
           G  FSEVYMESI+       +  P    RV   V+PGF
Sbjct: 366 GCPFSEVYMESIIDEPSPAPDCPPETHSRVAFTVVPGF 403


>GSVIVT01024581001 assembled CDS
          Length = 432

 Score =  232 bits (591), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 192/331 (58%), Gaps = 42/331 (12%)

Query: 92  EKIQAADKLVISELKNLSELKHFYRENYPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVK 151
           EKI+AA++LV++E++ L ++K  Y+E             +L +   E   L++  E +++
Sbjct: 138 EKIKAANELVVAEVEALCKIKRAYKEKK------HLGKVKLGSSHSE---LIQVKEKLLE 188

Query: 152 KFQSEIQNKDSXXXXXXXXXXXATQKRAKLEKNLKLRGLSTKXXXXXXXXNGYYPVDLTP 211
           + +S+   KDS              K A+L   L+ R L  +        +         
Sbjct: 189 QLKSQATAKDSEILSLRGQLEDLDLKNAELTDKLERRCLEEEKVGVFNQPS--------- 239

Query: 212 ELFMTAVEVAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPD-VVYAKRAHKKYAFESHI 270
             F  A   A KAIHDF+KPLI+ MK +GWDLD AAN+IE D VVY+KR HKKYAFE++I
Sbjct: 240 --FQDAFNAASKAIHDFAKPLISFMKVSGWDLDLAANAIEEDAVVYSKRCHKKYAFEAYI 297

Query: 271 CQRMFSGFQQESFSIKSDNVMVSRESFFHQYLALREMDPLDVLGQDPDSDFGKFCRSKYL 330
            +RMF G      SI+S N        F         +P+  L +DPDS F KFCR+KY+
Sbjct: 298 ARRMFHGI-----SIQSCN--------FEYGTGFD--NPVGALIEDPDSGFAKFCRTKYI 342

Query: 331 VVVHPKMEGSFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQ 390
           +VVHPKME SFFGNLD    VM G HPRTPFYQAF+K+AK +W+L  +A S  P  ++F+
Sbjct: 343 LVVHPKMEASFFGNLDHWMLVMRGKHPRTPFYQAFVKMAKCVWVLLGIAASVKPKAEIFE 402

Query: 391 VRRGSEFSEVYMESIVKNLILDENQKPRVGL 421
           V+RGSEFS+VYME +      + +++P VG+
Sbjct: 403 VKRGSEFSDVYMECV------EGDKEPTVGV 427


>GSVIVT01021261001 assembled CDS
          Length = 533

 Score =  221 bits (563), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 187/336 (55%), Gaps = 54/336 (16%)

Query: 92  EKIQAADKLVISELKNLSELKHFYRENYPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVK 151
           + IQ ADK V+ EL+ +SELK  + +         PQ + L AEIQEQQSL+KTYE+ +K
Sbjct: 180 DAIQVADKAVVRELRLISELKQSFLKKQLDLSLAVPQVTVLLAEIQEQQSLMKTYEITMK 239

Query: 152 KFQSEIQNKDSXXXXXXXXXXXATQKRAKLEKNLKLRGLSTKXXXXXXXXNGYYPVDLTP 211
           K +SE+  KDS                 +L+K L+                         
Sbjct: 240 KLESEMDLKDSHID--------------ELKKRLQ------------------------- 260

Query: 212 ELFMTAVEVAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPDVVYAKRAHKKYAFESHIC 271
           E    AV    ++I  F K + + M++A WD+DAAA SI PD V AK  H+ +AFES +C
Sbjct: 261 EFLHYAV----RSIRRFVKFMSSEMESAHWDMDAAAKSIVPDTVLAKPTHRCFAFESFVC 316

Query: 272 QRMFSGFQQESFSIKSDNVMVSRESFFHQYLALREMDPLDVLGQDPDSDFGKFCRSKYLV 331
           + MF GF   +FS+         ES F +   L+ ++P+  L Q+P S FGKF R+KYL 
Sbjct: 317 RAMFEGFNSPNFSLS--------ESSFKK---LKSVNPIHFLSQNPRSTFGKFVRAKYLS 365

Query: 332 VVHPKMEGSFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQV 391
           +VH KME SFFGNL+QR  +  G +P T F+ AF ++AK +W+LH LA+SFD  + VFQV
Sbjct: 366 LVHAKMECSFFGNLNQRKLLNAGSYPETAFFAAFAEMAKRVWVLHGLAFSFDVEIGVFQV 425

Query: 392 RRGSEFSEVYMESIVKNLILDENQKPRVGLMVMPGF 427
              S FSEVYME + ++     +   RVG  V+PGF
Sbjct: 426 SHNSRFSEVYMECVTEDAFDTVDGDLRVGFTVVPGF 461


>GSVIVT01024812001 assembled CDS
          Length = 388

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 182/357 (50%), Gaps = 35/357 (9%)

Query: 92  EKIQAADKLVISELKNLSELKHFYRENYPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVK 151
           +K++ AD  V+SEL+ L  L+  +R    +    S     +AA ++E   ++  YE  V+
Sbjct: 28  DKMRMADVAVVSELRRLGVLRERFRRRVGRGGRGSGGRGPVAATLRE---VVAPYEAAVE 84

Query: 152 KFQSEIQNKDSXXXXXXXXXXXATQKRAKLEKNLKLRGLSTKXXXXXXXXNGYYPVDLTP 211
           + +  ++ ++            AT   +  +K    R  S K            P    P
Sbjct: 85  ELKRAVKAREVEVENLKEKLKSATSLNSSGKKG---RFQSKKKVSCSQGQVAALP---AP 138

Query: 212 ELFMTAVEVAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPD-----------VVYAKRA 260
           +LF   + V  +A   F+  L+++M++A WD+ AA  SIE             +      
Sbjct: 139 DLFEGTMGVVKEASKSFTALLLSLMRSAHWDIAAAVRSIEAATAVTGATADTAISVVGSH 198

Query: 261 HKKYAFESHICQRMFSGFQQESFSIKSDNVMVS-------RESFFHQYLALREMDPLDVL 313
           H KYA ES++C+++F GF  E+F +  D  + S       R   F QY  ++ MDP+++L
Sbjct: 199 HAKYALESYVCRKIFQGFDHETFYM--DGSLSSLLHPDQYRRDCFAQYRDMKAMDPVELL 256

Query: 314 GQDPDSDFGKFCRSKYLVVVHPKMEGSFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIW 373
           G  P   FGKFC  KYL +VHPKME S FG+L+ R  V+ G HPR+ FY  FL LAK++W
Sbjct: 257 GILPTCHFGKFCTKKYLAIVHPKMEESLFGDLEHRRQVLAGNHPRSHFYSEFLGLAKAVW 316

Query: 374 LLHRLAYSFDPNVKVFQVRRGSEFSEVYMESIVKNLILDENQKPR---VGLMVMPGF 427
           LLH LA+S DP    F+  RG++F   YMES+++   L   + P    VG+ V PGF
Sbjct: 317 LLHLLAFSLDPPPGHFEASRGADFHPQYMESVIR---LSGGRVPADQIVGIPVSPGF 370


>GSVIVT01025319001 assembled CDS
          Length = 591

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 40/272 (14%)

Query: 175 TQKRAKLEKNLKLRGLSTKXXXXXXXXNG--YYPV--DLTPELFMTAVEVAFKAIHDFSK 230
           T +   L+   KLR L  K        NG  + PV  ++  E F+  V  A  ++  F K
Sbjct: 322 TAQAKDLQAPEKLRSL-PKRGKSSIDGNGENFIPVSEEVMVEGFLQIVSEARLSVKQFCK 380

Query: 231 PLINMMKAAGWDLDAAANSI-EPDVVYAKRAHKK---YAFESHICQRMFSGFQ----QES 282
            LI  ++ +   L    NS+ +P  +     + K   Y  E+ I Q ++  F+    Q++
Sbjct: 381 ILIGQIEESDNTLTDNLNSLLQPYKLSLTSKYSKAVLYHLEAIINQSLYQDFENCVFQKN 440

Query: 283 FSIKSDNVMVSRESFFHQYLALREMDPLDVLGQDP---DSDFGKFCRSKYLVVVHPKMEG 339
            + K  +    R++ F  ++ALR +   +VL +       +F KFC  K   ++      
Sbjct: 441 GTAKLLDPHQDRQARFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIS----- 495

Query: 340 SFFGNLDQRNYVMGGGHP-RTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQVRRGSEFS 398
                       +    P      Q+F   AK IWLLH LA+SF+P + + +V     F 
Sbjct: 496 -----------TLNWTRPWPEQLLQSFFVSAKCIWLLHLLAFSFNPPLGILRVEENRSFD 544

Query: 399 EVYMESIVKNLILD--ENQKP-RVGLMVMPGF 427
             YME    ++ +D   +Q P RV +MVMPGF
Sbjct: 545 PHYME----DMFMDRQRSQGPSRVKIMVMPGF 572