Jatropha Genome Database

JcCB0279151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279151.10 - phase: 0 
         (69 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033068001 assembled CDS                                        58   7e-10
GSVIVT01008561001 assembled CDS                                        58   1e-09
GSVIVT01033074001 assembled CDS                                        53   2e-08
GSVIVT01033069001 assembled CDS                                        53   2e-08

>GSVIVT01033068001 assembled CDS
          Length = 69

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          MADW                   QLPG+ R VEFG+ +T+  +I+VHT+I+F + TI ++
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQLPGNNRVVEFGNMQTSRISILVHTIIYFGLITIFLI 60

Query: 61 AVRVRIYTG 69
          A+ V IYTG
Sbjct: 61 AIGVHIYTG 69


>GSVIVT01008561001 assembled CDS
          Length = 138

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          MADW                   Q+PG  R VEFGS  T+G +I+VHT+I+F + TI ++
Sbjct: 22 MADWGPVLIAVVLFVLLTPGLLFQVPGKNRVVEFGSMHTSGASILVHTIIYFGLITIFLI 81

Query: 61 AVRVRIYT 68
          A+ V IYT
Sbjct: 82 AIGVHIYT 89


>GSVIVT01033074001 assembled CDS
          Length = 69

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          M+DW                   Q+PG  R +EF +F+T+G +I+VH++I+F++  I +L
Sbjct: 1  MSDWGAVFVSVMLFILLMPGLLIQIPGRGRFIEFTNFQTSGVSILVHSLIYFTLICIFLL 60

Query: 61 AVRVRIYTG 69
          A+ V +Y G
Sbjct: 61 AIGVHMYIG 69


>GSVIVT01033069001 assembled CDS
          Length = 80

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 2  ADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILILA 61
          ADW                   QLP  TR VEFG+  T+G AI+VH +I+F + TIL++A
Sbjct: 13 ADWGPVVVSVVLFILLSPGLLFQLPARTRVVEFGNMCTSGIAILVHAIIYFCILTILLIA 72

Query: 62 VRVRIYT 68
          V + I+ 
Sbjct: 73 VGIHIHA 79