Jatropha Genome Database

JcCB0279111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279111.10 - phase: 0 
         (338 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033651001 assembled CDS                                       405   e-113
GSVIVT01031313001 assembled CDS                                       290   5e-79
GSVIVT01028205001 assembled CDS                                       219   2e-57
GSVIVT01031492001 assembled CDS                                       108   4e-24
GSVIVT01017675001 assembled CDS                                        64   9e-11

>GSVIVT01033651001 assembled CDS
          Length = 445

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/300 (69%), Positives = 223/300 (74%), Gaps = 36/300 (12%)

Query: 36  KANVDYEKIVRDTCRSIGFVSDDVGLDADKCKVLVYIEQQSPDIAQGVHGHLTKRPEEIG 95
           KA VDYEKIVRDTCR IGFVS DVGLDAD CKVLV IEQQSPDIAQGVHGHL+K+PEEIG
Sbjct: 152 KAKVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLSKKPEEIG 211

Query: 96  AGDQGHMFGYATDETPEFMPLSHVLATKLGARLTDVRKNGTCPWLRPDGKTQVTVEYYND 155
           AGDQGHMFGYATDETPE MPL+HVLATKLGA+LT+VRKN TCPWLRPDGKTQVTVEY N+
Sbjct: 212 AGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNE 271

Query: 156 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 215
            GAMVP+RVHTVLISTQHDETVTND+IA +L+EHVIKP                      
Sbjct: 272 GGAMVPIRVHTVLISTQHDETVTNDQIAKELREHVIKP---------------------- 309

Query: 216 IGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLA 275
                         IIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLA
Sbjct: 310 --------------IIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLA 355

Query: 276 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKGDSQDCKRKLRLQAWYDCYNLDLKRGGN 335
           RRC+VQVSYAIGVPEPLSVFVD+Y TGKIPDK      K     +      NLDLKRGGN
Sbjct: 356 RRCLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLDLKRGGN 415


>GSVIVT01031313001 assembled CDS
          Length = 299

 Score =  290 bits (743), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 179/301 (59%), Gaps = 100/301 (33%)

Query: 36  KANVDYEKIVRDTCRSIGFVSDDVGLDADKCKVLVYIEQQSPDIAQGVHGHLTKRPEEIG 95
           KAN+DYEKIVRDTCR++GF                    QSPDIAQGVHGHLTKRPEEIG
Sbjct: 66  KANLDYEKIVRDTCRAVGF--------------------QSPDIAQGVHGHLTKRPEEIG 105

Query: 96  AGDQGHMFGYATDETPEFMPLSHVLATKLGARLTDVRKNGTCPWLRPDGKTQVTVEYYND 155
           AGDQGHMFGYATDETPE MPLSHVLATKLGARLT+VRKNGTCPWLRPDGK          
Sbjct: 106 AGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGK---------- 155

Query: 156 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 215
                          TQHDETVTNDEIAADLKEHVIKP+ P K         ++ SG ++
Sbjct: 156 ---------------TQHDETVTNDEIAADLKEHVIKPIDPTK---------VDRSGAYI 191

Query: 216 IGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLA 275
                                                         VRQAAKSIVA+GLA
Sbjct: 192 ----------------------------------------------VRQAAKSIVASGLA 205

Query: 276 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKGDSQDCKRKLRLQAWYDCYNLDLKRGGN 335
           RRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK   +  K     +      NLDLKRGGN
Sbjct: 206 RRCIVQVSYAIGVPEPLSVFVDTYATGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGN 265

Query: 336 G 336
           G
Sbjct: 266 G 266


>GSVIVT01028205001 assembled CDS
          Length = 235

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 119/162 (73%), Gaps = 40/162 (24%)

Query: 36  KANVDYEKIVRDTCRSIGFVSDDVGLDADKCKVLVYIEQQSPDIAQGVHGHLTKRPEEIG 95
           KA++DYEKIVRDTCR+IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGHLTKRPEEIG
Sbjct: 91  KADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 150

Query: 96  AGDQGHMFGYATDETPEFMPLSHVLATKLGARLTDVRKNGTCPWLRPDGKTQVTVEYYND 155
           AGDQGH+               HVLATKLGARLT+VRKNGTC WLRPDGK          
Sbjct: 151 AGDQGHI---------------HVLATKLGARLTEVRKNGTCSWLRPDGK---------- 185

Query: 156 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 197
                          TQHDETVTNDEIAADLKEHVIKPVIPE
Sbjct: 186 ---------------TQHDETVTNDEIAADLKEHVIKPVIPE 212


>GSVIVT01031492001 assembled CDS
          Length = 178

 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 68/115 (59%), Gaps = 30/115 (26%)

Query: 147 QVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIF 206
           QVTVEY N+ GAMVP+RVHTVL+STQHDETVTN++IA DLKEHVIKPVIP          
Sbjct: 66  QVTVEYRNEGGAMVPIRVHTVLVSTQHDETVTNEQIAKDLKEHVIKPVIP---------- 115

Query: 207 HLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYI 261
                                +KIIIDTY             KDPTKVDRSGAYI
Sbjct: 116 --------------------PQKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYI 150



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 24/27 (88%)

Query: 55 VSDDVGLDADKCKVLVYIEQQSPDIAQ 81
          V+ DVGLDAD CKVLV IEQQSPDIAQ
Sbjct: 40 VASDVGLDADNCKVLVNIEQQSPDIAQ 66


>GSVIVT01017675001 assembled CDS
          Length = 168

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 102 MFGYATDETPEFMPLSHVLATKLGARLTDVR 132
           MFGYATDETPE MPLSHVLATKLGARLT+VR
Sbjct: 1   MFGYATDETPELMPLSHVLATKLGARLTEVR 31