Jatropha Genome Database

JcCB0273441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0273441.20 - phase: 0 /pseudo
         (429 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037915001 assembled CDS                                       621   e-178
GSVIVT01037913001 assembled CDS                                       595   e-170

>GSVIVT01037915001 assembled CDS
          Length = 419

 Score =  621 bits (1602), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 290/386 (75%), Positives = 327/386 (84%), Gaps = 10/386 (2%)

Query: 1   MAFSEFRPLDENALVEYIKATPVLSNKIGNEFDNLEVKEVGDGNLNFVYIVIGSAGSFVI 60
           MA S FRPLD+ +L+EYIKATP LS+K+ N+ D L++KEVGDGNLNFVYIVI S+GSFVI
Sbjct: 1   MASSGFRPLDDKSLIEYIKATPALSSKLANQLDGLQIKEVGDGNLNFVYIVISSSGSFVI 60

Query: 61  KQALPYIRCIGESWPMTKERAYFEGRALKEHGKLSPEHVPEVYHFDRTMSLIAMRYLEPP 120
           KQALPYIRCIGESWPMTKERAYFE  AL+E  +   +HVPEVYHFDR M+LI MRYLEPP
Sbjct: 61  KQALPYIRCIGESWPMTKERAYFEATALREQRRWCSDHVPEVYHFDREMALIGMRYLEPP 120

Query: 121 HIILRKGLIAGVKYPHLAEHISDYMARXXXXXXXXXXXXXEHKRVVAEFCGNVELCRLTE 180
           HIILRKGLIAG++YP LAEH+S++MAR             EHKR VAEFCGNVELCRLTE
Sbjct: 121 HIILRKGLIAGIEYPLLAEHMSEFMARTLFFTSLLYHDTTEHKRAVAEFCGNVELCRLTE 180

Query: 181 QVVFSDPYKVSEYNRWTSPYLDQDAVAVREDNILKLEVAELKSRFCEQAQALIHGDLHTG 240
           QVVFSDPYKVS+YNRWTSPYLD+DA AVREDNILKLEVAELKS FCE++QAL+HGDLHTG
Sbjct: 181 QVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNILKLEVAELKSMFCERSQALVHGDLHTG 240

Query: 241 SVMVTSSSTQVIDPEFAFYGPMGFDIGAFIGNLILAYFSQDGHASPVDDRKFISESHILM 300
           SVMVT  STQVIDPEF FYGPMGFDIGAF+GNLILAYF+QDGHA  V+DRK         
Sbjct: 241 SVMVTPDSTQVIDPEFGFYGPMGFDIGAFLGNLILAYFAQDGHADQVNDRK--------- 291

Query: 301 QSYKEWILKTIEETWNLFYKKFIGLWDEHKDGPGEAYLPAIYNNPEVRQLVQENFLKGLF 360
            +YKEWILK IE+TWNLF+KKF  LWDEH++G GEAYLP IYNN E++ L Q+ +++GL 
Sbjct: 292 -TYKEWILKAIEQTWNLFHKKFTALWDEHRNGSGEAYLPEIYNNSELQLLTQKKYMQGLL 350

Query: 361 HDTLGFGAAKMIRRIVGVAHVEDFES 386
           HDTLGFGAAKMIRRIVGVAHVEDFES
Sbjct: 351 HDTLGFGAAKMIRRIVGVAHVEDFES 376


>GSVIVT01037913001 assembled CDS
          Length = 419

 Score =  595 bits (1533), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/426 (68%), Positives = 336/426 (78%), Gaps = 11/426 (2%)

Query: 1   MAFSEFRPLDENALVEYIKATPVLSNKIGNEFDNLEVKEVGDGNLNFVYIVIGSAGSFVI 60
           M  S FRPLD+ +LVEYIKATP L +K+ N+   L++KEVGDGNLNFVY+VI SAGSFVI
Sbjct: 1   MTSSGFRPLDDKSLVEYIKATPALFSKLANQLHGLQIKEVGDGNLNFVYVVISSAGSFVI 60

Query: 61  KQALPYIRCIGESWPMTKERAYFEGRALKEHGKLSPEHVPEVYHFDRTMSLIAMRYLEPP 120
           KQALPYIR IGESWPMTK+RAYFE  AL+E  +    HVPEVYHFDR M++I MRYLEPP
Sbjct: 61  KQALPYIRSIGESWPMTKDRAYFEATALREQRRWCSNHVPEVYHFDREMAVIGMRYLEPP 120

Query: 121 HIILRKGLIAGVKYPHLAEHISDYMARXXXXXXXXXXXXXEHKRVVAEFCGNVELCRLTE 180
           HIILRKGLIAG++YP LAEH+S++MAR             EHKR VAEFCGNVELCR T 
Sbjct: 121 HIILRKGLIAGIEYPLLAEHMSEFMARTLFFTSLLYHDTTEHKRAVAEFCGNVELCRHTG 180

Query: 181 QVVFSDPYKVSEYNRWTSPYLDQDAVAVREDNILKLEVAELKSRFCEQAQALIHGDLHTG 240
           QVVFSDPYKVS+YN WTSPYLD+DA AVREDNILKLEVAELKS FCE++QAL+HGDLHTG
Sbjct: 181 QVVFSDPYKVSQYNWWTSPYLDRDAEAVREDNILKLEVAELKSMFCERSQALVHGDLHTG 240

Query: 241 SVMVTSSSTQVIDPEFAFYGPMGFDIGAFIGNLILAYFSQDGHASPVDDRKFISESHILM 300
           SVMVT  STQVIDPEF FYGPMGFDIGAF+GNLILAYF+QDGH   V+DRK         
Sbjct: 241 SVMVTPDSTQVIDPEFGFYGPMGFDIGAFLGNLILAYFAQDGHDDQVNDRK--------- 291

Query: 301 QSYKEWILKTIEETWNLFYKKFIGLWDEHKDGPGEAYLPAIYNNPEVRQLVQENFLKGLF 360
            +YK+WILKTIE+TWN F+KKF  LW+EH++G GEAYLP IYNNPE++ L Q+ +++ L 
Sbjct: 292 -TYKKWILKTIEQTWNFFHKKFTALWNEHRNGSGEAYLPEIYNNPELQLLTQKKYMQDLL 350

Query: 361 HDTLGFGAAKMIRRIVGVAHVEDFESNXRCXQTSXMXEAGTXVCKTSSXRKGGRFQSINE 420
           HDTLGFGAAKMIRRIVGVAHVEDFES     + +   E    V      ++  +FQ+I E
Sbjct: 351 HDTLGFGAAKMIRRIVGVAHVEDFESIVDASKRANC-ERQALVFAKMLLKERRKFQAITE 409

Query: 421 VVSAIR 426
           VVSAI+
Sbjct: 410 VVSAIQ 415