Jatropha Genome Database

JcCB0273441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0273441.10 + phase: 0 
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037910001 assembled CDS                                       303   4e-83
GSVIVT01037911001 assembled CDS                                       186   9e-48
GSVIVT01020876001 assembled CDS                                        51   3e-07

>GSVIVT01037910001 assembled CDS
          Length = 226

 Score =  303 bits (776), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 161/197 (81%)

Query: 13  IINSPRTSTGSVRYAQEIGIELSKQTLTNATDFIWTLLQLNKETERKGVQDISLIIEDME 72
           + N+  +S G VR+  EIGI  S+QTL +ATDFIW + Q N   ERK VQ +SLIIE+M+
Sbjct: 28  VTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDFIWGVFQQNTPEERKTVQKVSLIIENMD 87

Query: 73  GVAYTDDNEIHFSTKYVANYSEDLKSEVIGILYHEMTHIWQWNGNGKTPGGLIEGIADLV 132
           GVAY  +NEIH +  Y+ +YS D+K+E  G+LYHEMTHIWQWNGNG+TPGGLIEGIAD V
Sbjct: 88  GVAYASNNEIHVNANYIGSYSGDVKTEFTGVLYHEMTHIWQWNGNGQTPGGLIEGIADYV 147

Query: 133 RLKANYAPSHWVQPGQGERWDQGYDVTARFLDYCNDLRDGFVADLNKKMRSDYKVEYFVE 192
           RLKANYAPSHWVQPGQG RWDQGYDVTARFLDYCN LR+GFVA+LNKKMRS Y  ++FVE
Sbjct: 148 RLKANYAPSHWVQPGQGNRWDQGYDVTARFLDYCNSLRNGFVAELNKKMRSGYSADFFVE 207

Query: 193 LLGKPVHQLWNEYKAKH 209
           LLGK V QLW +YKAK+
Sbjct: 208 LLGKTVDQLWTDYKAKY 224


>GSVIVT01037911001 assembled CDS
          Length = 104

 Score =  186 bits (471), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 91/102 (89%)

Query: 108 MTHIWQWNGNGKTPGGLIEGIADLVRLKANYAPSHWVQPGQGERWDQGYDVTARFLDYCN 167
           MTHIWQWNGNG+ PGGLIEGIAD VRLKANYAPSHWVQPGQG+RWDQGYDVTARFLDYCN
Sbjct: 1   MTHIWQWNGNGQAPGGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYDVTARFLDYCN 60

Query: 168 DLRDGFVADLNKKMRSDYKVEYFVELLGKPVHQLWNEYKAKH 209
            LR+GFVA+LNKKMRS Y  ++FVELL   V QLW +YKAK+
Sbjct: 61  SLRNGFVAELNKKMRSGYSADFFVELLRNNVDQLWTDYKAKY 102


>GSVIVT01020876001 assembled CDS
          Length = 312

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 108 MTHIWQWNGNGKTPGGLIEGIADLVRLKANYAPSHWVQ-----PGQGERWDQGYD--VTA 160
           M  IW W+G    P  L+EG+ + + + A ++P+  +       G G       D    A
Sbjct: 146 MARIWLWDGEDSAPPALLEGMVEYITILAGFSPAPTMPNSVDLSGSGNFCWMNKDPIAVA 205

Query: 161 RFLDYCNDLRDGFVADLNKKMRSDYKVEYFVELLGKPVHQLWNEYKA 207
            FL+YC     GF+  LN+ M   +        LG PV  L   Y +
Sbjct: 206 HFLNYCEAQNRGFIQRLNQAMEHQWHEGALEAALGFPVQDLCASYNS 252