Jatropha Genome Database

JcCB0272031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0272031.10 + phase: 1 /partial/short
         (45 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027208001 assembled CDS                                        64   1e-11
GSVIVT01001101001 assembled CDS                                        58   7e-10

>GSVIVT01027208001 assembled CDS
          Length = 451

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)

Query: 1   IWSHLLRNFEMELVSPFPEIDWNAXXXXXXXXXXXRYKRRELSVD 45
           IWSHLLRNFE+EL+SPFPE+DWNA           RYKRREL V+
Sbjct: 407 IWSHLLRNFELELISPFPEVDWNAMVVGVKGKVMVRYKRRELPVN 451


>GSVIVT01001101001 assembled CDS
          Length = 440

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 29/43 (67%)

Query: 3   SHLLRNFEMELVSPFPEIDWNAXXXXXXXXXXXRYKRRELSVD 45
           SHLLRNFE EL+SPFPEIDWNA           RYKRR L VD
Sbjct: 398 SHLLRNFEFELISPFPEIDWNAMVVGVKGKVMVRYKRRVLPVD 440