Jatropha Genome Database

JcCB0270661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0270661.10 + phase: 0 /partial
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009087001 assembled CDS                                       299   5e-82
GSVIVT01035168001 assembled CDS                                       160   3e-40

>GSVIVT01009087001 assembled CDS
          Length = 775

 Score =  299 bits (766), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 153/191 (80%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           GD   KG FATRV+GS+DLY+VNKRKPYHSVNF+IAHDGFTLYDLVSYN KH        
Sbjct: 512 GDPGTKGNFATRVAGSSDLYKVNKRKPYHSVNFVIAHDGFTLYDLVSYNSKHNNANGEGG 571

Query: 61  XXXXXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 120
                  +SWNCGFEGET D  IKALRSRQMKNFHLALM SQGTPMMLMGDEYGHTRYGN
Sbjct: 572 KDGTNDNFSWNCGFEGETADAKIKALRSRQMKNFHLALMCSQGTPMMLMGDEYGHTRYGN 631

Query: 121 NNSYGHDTSINNFQWGLLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWHEDNW 180
           NNSYGHDT+IN+F WG LD+++   FRFF EVIKFR  H VF  ENFL   DVTWHEDNW
Sbjct: 632 NNSYGHDTAINHFLWGQLDSRKRDRFRFFKEVIKFRRMHHVFGRENFLEKKDVTWHEDNW 691

Query: 181 DNYESKFLAFT 191
           DNYESKFLAFT
Sbjct: 692 DNYESKFLAFT 702


>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 111/196 (56%), Gaps = 6/196 (3%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           G     G FA  + GS +LY+   RKP++S+NF+ AHDGFTL DLV+YN KH        
Sbjct: 526 GSDGFSGAFAECLCGSPNLYQEGGRKPWNSINFVCAHDGFTLADLVTYNKKHNNANGEDN 585

Query: 61  XXXXXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 120
                   SWNCG EGE    ++K LR RQM+NF L LM+SQG PM+ MGDEYGHT+ GN
Sbjct: 586 NDGENHNNSWNCGQEGEFASISVKKLRKRQMRNFFLCLMVSQGVPMIYMGDEYGHTKGGN 645

Query: 121 NNSYGHDTSINNFQWGLLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWH---- 176
           NN+Y  D  +N F+W   +   S  FRF   + KFR   +     +F +   + WH    
Sbjct: 646 NNTYCQDNYMNYFRWDKKEESLSDFFRFCCLMSKFRQECESLGLNDFPTAERLQWHGRTP 705

Query: 177 -EDNWDNYESKFLAFT 191
              +W    S+F+AFT
Sbjct: 706 GMPDWSK-TSRFVAFT 720