Jatropha Genome Database

JcCB0269831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269831.10 - phase: 0 
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035829001 assembled CDS                                       160   4e-40
GSVIVT01017714001 assembled CDS                                        65   2e-11

>GSVIVT01035829001 assembled CDS
          Length = 169

 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 97/152 (63%), Gaps = 3/152 (1%)

Query: 1   MQEQATXXXXXXXXXXXXXXXXXXAFQLEVKEGMESDEEIRRVPEI-SGEPAGTSASGRD 59
           MQEQAT                  A Q EVKEGMESDEEIRRVPEI SG+PAG SASGR+
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSALQAEVKEGMESDEEIRRVPEIGSGDPAGPSASGRE 60

Query: 60  ASSVAGLDRVQAPGEGQSQRKRGRSPADKEXXXXXXXXXXXVSAQQARERKKAYLNELET 119
           A+ VAG DRVQA G+GQ  RKRGRSPADKE           VSAQQARERKKAYLNELE 
Sbjct: 61  AALVAGPDRVQASGDGQ--RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELEV 118

Query: 120 RVXXXXXXXXXXXXXXSTLQNENQMLRHVCHN 151
           RV              STLQNENQMLRH+  N
Sbjct: 119 RVKDLERKNSELEERLSTLQNENQMLRHILKN 150


>GSVIVT01017714001 assembled CDS
          Length = 186

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 35  ESDEEIRRVPEISGEPAGTSASGRDASSVAGLDRVQAPGEGQS--QRKRGRSPADKEXXX 92
           +SDE++ RVP++  +P   S      ++           +  S  +R+RGR+P D+E   
Sbjct: 48  DSDEDLFRVPDVEAQPPSDSTRTTTTTTTTNTSNNPEVQQQTSSGKRRRGRNPVDREYRR 107

Query: 93  XXXXXXXXVSAQQARERKKAYLNELETRVXXXXXXXXXXXXXXSTLQNENQMLRHVCHN 151
                   VSAQQARERKK Y+N+LE+R               STL NEN MLR V  N
Sbjct: 108 LKRLLRNRVSAQQARERKKVYVNDLESRAQELQDRNSKLEEKISTLVNENTMLRKVLMN 166