Jatropha Genome Database

JcCB0269811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269811.10 + phase: 0 /partial
         (448 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019915001 assembled CDS                                       729   0.0  
GSVIVT01028789001 assembled CDS                                       482   e-136
GSVIVT01009814001 assembled CDS                                       241   4e-64
GSVIVT01012686001 assembled CDS                                       100   2e-21
GSVIVT01030451001 assembled CDS                                        63   2e-10

>GSVIVT01019915001 assembled CDS
          Length = 524

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/428 (86%), Positives = 392/428 (91%), Gaps = 5/428 (1%)

Query: 1   FSIFKTKATLSKQNSLLPGRKERDTGNQKLDTSNGIDESVNEGVPAGRYFAALRGPELDQ 60
           FSIF TK+ L+KQNS LP R+E +   QK D S G+D+SV    PAGRYFAALRGPELDQ
Sbjct: 76  FSIFMTKSALTKQNSSLPLRRESELDFQKNDGS-GVDDSV----PAGRYFAALRGPELDQ 130

Query: 61  VKEYEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWLNLATSPATKFLHIRPFINLF 120
           VKE EDILLPKDE+WPFLLRFPIGCFGICLGLSSQAVLW  LATSPATKFLH+ PFINL 
Sbjct: 131 VKESEDILLPKDEQWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATKFLHVTPFINLA 190

Query: 121 LWVLAVAVLISVAFTYILKCIFYFEAVKREYFHPVRVNFFFAPWIVCMFLAISVPPILAP 180
           LW LA+AVL+SV+F YILKC+FYFEAVKREYFHPVRVNFFFAPW+VCMFLA+S+P ILAP
Sbjct: 191 LWFLALAVLLSVSFIYILKCVFYFEAVKREYFHPVRVNFFFAPWVVCMFLALSLPSILAP 250

Query: 181 KTLHPALWCTFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKVG 240
           KTLHPA+WC FM PYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKVG
Sbjct: 251 KTLHPAIWCIFMAPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKVG 310

Query: 241 WKEVAKFLWAIGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIYG 300
           W+E AKFLWA+GFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIYG
Sbjct: 311 WQEAAKFLWAVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIYG 370

Query: 301 DFDGLSRNCYFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTVSVATIKYAEQVPGV 360
           DFDGLSR CYFIALFLYISLVVRINFF GFRFSVAWWSYTFPMTTVSVATIKYAEQVP V
Sbjct: 371 DFDGLSRTCYFIALFLYISLVVRINFFRGFRFSVAWWSYTFPMTTVSVATIKYAEQVPSV 430

Query: 361 PSKVLALGLSFMSSTMVSVLFVSTLLHAFVWRTLFPNDLAIAITKKRLVKDIKPFKKAYD 420
            SK LA+ LSFMSSTMVSVLFVSTLLHAFVW TLFPNDLAIAITK++  +D KPFKKAYD
Sbjct: 431 LSKGLAVFLSFMSSTMVSVLFVSTLLHAFVWHTLFPNDLAIAITKRKHGRDKKPFKKAYD 490

Query: 421 IRRWTKQA 428
           IRRWTKQ+
Sbjct: 491 IRRWTKQS 498


>GSVIVT01028789001 assembled CDS
          Length = 627

 Score =  482 bits (1240), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 310/424 (73%), Gaps = 13/424 (3%)

Query: 1   FSIFKT-KATLSKQNSLLPGR-KERDTGNQKLDTSNGIDESVNEGVPAGRYFAALRGPEL 58
           F  FKT    L +Q S L G+ +E +  N      N    S  E +P  RYF AL GPEL
Sbjct: 178 FDSFKTWSGKLERQLSNLRGKPQESELEN------NTTQNSEMEILPVDRYFDALEGPEL 231

Query: 59  DQVKEYEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWLNLATSPATKFLHIRPFIN 118
           D +K  E+++LP+D+KWPFLLR+PI  FGICLG+SSQA++W  LATSP+  FLH+   +N
Sbjct: 232 DTLKASEELVLPEDKKWPFLLRYPISSFGICLGMSSQAIMWKTLATSPSMNFLHVSSNVN 291

Query: 119 LFLWVLAVAVLISVAFTYILKCIFYFEAVKREYFHPVRVNFFFAPWIVCMFLAISVPPIL 178
             LW ++ A++  V+F Y+LK IFYFEAV+REY+HP+RVNFFFAPWI  +FLA+ VPP +
Sbjct: 292 FSLWCISAALIAIVSFIYLLKVIFYFEAVRREYYHPIRVNFFFAPWIAFLFLALGVPPSV 351

Query: 179 APKTLHPALWCTFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASK 238
           A + L PALW   M P F  ELKIYGQW+SGG+RRL KVANPS+HLS+VGNFVGA+L + 
Sbjct: 352 A-EHLPPALWYILMTPVFCFELKIYGQWMSGGQRRLSKVANPSNHLSIVGNFVGALLGAS 410

Query: 239 VGWKEVAKFLWAIGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETI 298
           +G KE   F +AIG AHY+V+FVTLYQRLPT+  LPKELHPV+ +F+AAPS AS+AW  I
Sbjct: 411 MGLKEGPIFFFAIGLAHYIVLFVTLYQRLPTNATLPKELHPVFFLFVAAPSVASMAWTKI 470

Query: 299 YGDFDGLSRNCYFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTVSVATIKYAEQVP 358
            G FD  SR  YFIALFLY SL VR+NFF GFRFS+AWW+YTFPMT  ++ATI+Y+ +V 
Sbjct: 471 QGSFDYGSRIAYFIALFLYFSLAVRVNFFRGFRFSLAWWAYTFPMTGAAIATIRYSNEVT 530

Query: 359 GVPSKVLALGLSFMSSTMVSVLFVSTLLHAFVWRTLFPNDLAIAITKKRLVKDIKPFKKA 418
            + ++ L++ LS ++   V+ L ++T+LHAFV + LFPND+AIAI+++R     K  KK 
Sbjct: 531 NIVTRSLSVTLSAIAILTVTALLITTILHAFVLQDLFPNDIAIAISERRR----KTSKKW 586

Query: 419 YDIR 422
           Y +R
Sbjct: 587 YHLR 590


>GSVIVT01009814001 assembled CDS
          Length = 535

 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/342 (43%), Positives = 211/342 (61%), Gaps = 15/342 (4%)

Query: 67  ILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWLNL-----ATSPATKFLH-IRPFINLF 120
           I++ K      L RF  G F I L L  Q +LW  L      ++P  + L  + P   + 
Sbjct: 27  IIVAKRSISSVLTRFHAGYFRISLSLGGQTLLWKTLIDPSHGSNPPWRLLQTLPPLCFIL 86

Query: 121 LWVLAVAVLISVAFTYILKCIFYFEAVKREYFHPVRVNFFFAPWIVCMFLAISVPPILAP 180
           LW LA+   + ++  YI +C F F  V+ E+ H V VN+FFAPWI   FL +   P +AP
Sbjct: 87  LWSLALFTNVLLSLLYISRCFFRFRMVEAEFLHHVGVNYFFAPWI-SWFLLLQSAPFVAP 145

Query: 181 KTL-HPALWCTFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKV 239
            T+ +  LW  F  P   L++KIYGQW + GK+ L  VANP+S LSV+GN VG+  A+++
Sbjct: 146 NTVSYLVLWWVFAVPVVTLDVKIYGQWFTKGKQFLTLVANPTSQLSVIGNLVGSRAAAQM 205

Query: 240 GWKEVAKFLWAIGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIY 299
           GWKE A  L+++G  HYLV+FVTLYQRLP  + LP  L PV+S+F+AAPS AS+AWE+I 
Sbjct: 206 GWKESAVCLFSLGMVHYLVLFVTLYQRLPGGDRLPATLRPVFSLFVAAPSMASLAWESIA 265

Query: 300 GDFDGLSRNCYFIALFLYISLVVRINFF--TGFRFSVAWWSYTFPMTTVSVATIKYAEQV 357
           G FD  S+   F++LFL+ SL+ R   F  +  RFS+AWW+Y+FP+T +++A   YAE+V
Sbjct: 266 GRFDTASKMLLFLSLFLFASLLCRPTLFKKSMRRFSIAWWAYSFPVTILALAATDYAEEV 325

Query: 358 PGVPSKVLALGLSFMSSTMVSVLFVS-TLLHAFVWRTLFPND 398
                  +A GL  + + +  ++F+S TLL AF  R L P+D
Sbjct: 326 ----KTGIARGLMLLLTALSVLIFMSLTLLTAFNSRMLLPDD 363


>GSVIVT01012686001 assembled CDS
          Length = 1122

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 87/124 (70%), Gaps = 2/124 (1%)

Query: 248  LWAIGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIYGDFDGLSR 307
            ++ +G  HYLVVFVTLYQRL   + LP  L PV+ +F AAPS AS+AW++I G FD  S+
Sbjct: 950  MFTLGMVHYLVVFVTLYQRLSGGDRLPVMLRPVFFLFFAAPSMASLAWKSISGTFDTTSK 1009

Query: 308  NCYFIALFLYISLVVRINFF--TGFRFSVAWWSYTFPMTTVSVATIKYAEQVPGVPSKVL 365
              +F++LFL+ SL  R   F  +  +F+VAWW+Y+FP+T +++A+ +YA++V G  + VL
Sbjct: 1010 MLFFLSLFLFTSLACRPTLFKKSMRKFNVAWWAYSFPLTFLALASAEYAQKVEGEIAPVL 1069

Query: 366  ALGL 369
             L L
Sbjct: 1070 MLML 1073


>GSVIVT01030451001 assembled CDS
          Length = 303

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 2/79 (2%)

Query: 283 MFIAAPSAASIAWETIYGDFDGLSRNCYFIALFLYISLVVRINFFTGF--RFSVAWWSYT 340
           +F AAPS AS+AW++I G FD  S+  +F++LFL++SLV R   F     +F VAWW+Y+
Sbjct: 173 LFFAAPSMASLAWDSIIGTFDNSSKMLFFLSLFLFMSLVSRPGLFKKSIRKFDVAWWAYS 232

Query: 341 FPMTTVSVATIKYAEQVPG 359
           FP+T +++A  +YA++V G
Sbjct: 233 FPLTVLALAATEYAQEVNG 251



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 20/130 (15%)

Query: 56  PELDQVKEYEDILLPKDEKW----------PFLLRFPIGCFGICLGLSSQAVLWLNLATS 105
           P+++ V +   +  P D++           P L RF  G F I L L SQA+LW  L   
Sbjct: 32  PQIELVVDVSIVATPSDQQGLQGIVERLISPILTRFHAGYFRISLSLCSQALLWKTLG-E 90

Query: 106 PATKFLHIRPFIN-------LFLWVLAVAVLISVAFTYILKCIFYFEAVKREYFHPVRVN 158
           P+     IR  ++       + LW LA+ +L S++  YIL+C+F+FE VK E+ +   ++
Sbjct: 91  PSDDAHAIRHILHTLPSTAFVLLWSLALFILASLSLIYILRCLFHFELVKAEFLNDPAIS 150

Query: 159 FFFAPWIVCM 168
            +   W  CM
Sbjct: 151 DWEPGW--CM 158