Jatropha Genome Database

JcCB0269511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269511.10 - phase: 0 /pseudo
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029816001 assembled CDS                                        65   4e-11
GSVIVT01038208001 assembled CDS                                        58   5e-09

>GSVIVT01029816001 assembled CDS
          Length = 1050

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 57  KLNDFNYALWAQLMRMAIEGRNHLHHITG-NPAPLEKQNIAYTKWEQADLNACSWIINNI 115
           KLN  N+  W+Q +++ I  +  L ++ G N AP  + ++ Y  W+  +    +W+IN++
Sbjct: 588 KLNGCNFLKWSQSVKLFIRVKGKLGYLIGANKAPKPEDHV-YQTWDSENSMVMAWLINSM 646

Query: 116 EEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
           E  +   Y+  PTAK LW+ + ETY    ++ Q+F++  +  + KQG
Sbjct: 647 ETAIGQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQG 693


>GSVIVT01038208001 assembled CDS
          Length = 364

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 43  QTESSSPQHISISV-KLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWE 101
           Q E+S   H+ I+  KLN  NY  W+Q + M I G+    +ITG  A  E     Y KW 
Sbjct: 31  QMETS---HLPITAHKLNGQNYLQWSQSILMFIRGKEKDDYITGASAAPETTASTYKKWI 87

Query: 102 QADLNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQ 161
             +    SW++N++   +  N++ + TAK +W    ET+    ++ ++  +    ++ +Q
Sbjct: 88  AENNMVMSWLVNSMTADIGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQ 147

Query: 162 GKI 164
           G +
Sbjct: 148 GNL 150