Jatropha Genome Database

JcCB0269501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269501.10 + phase: 0 /partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027582001 assembled CDS                                       333   3e-92
GSVIVT01037628001 assembled CDS                                       219   7e-58
GSVIVT01015331001 assembled CDS                                       198   1e-51
GSVIVT01013770001 assembled CDS                                       191   3e-49
GSVIVT01013781001 assembled CDS                                       131   3e-31

>GSVIVT01027582001 assembled CDS
          Length = 418

 Score =  333 bits (854), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 179/214 (83%), Gaps = 1/214 (0%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           KHAEAVRIKC+GVPTVDMKNVC+QLEDKT GK+IHR  G LVLYRGRNY+PKKRPVIPLM
Sbjct: 205 KHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIHRQGGLLVLYRGRNYHPKKRPVIPLM 264

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +WRPHEPIYPRLIKT IDGLSI+ETKEMRKRGLAVPALTKLAKNGYY SLVPMVRDAFLT
Sbjct: 265 LWRPHEPIYPRLIKTVIDGLSIEETKEMRKRGLAVPALTKLAKNGYYGSLVPMVRDAFLT 324

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYKPPEDGELFADRE 180
           +EL+RIDCQGLE+ DYKKIGCKLRD VPCILVTFEKEQIVVWRGKDYKP E G+   +RE
Sbjct: 325 DELIRIDCQGLERRDYKKIGCKLRDFVPCILVTFEKEQIVVWRGKDYKPTEAGQFPIERE 384

Query: 181 FFDDPEGSSM-GLXXXXXXXXXXXXPGFYSGDDE 213
             D+ +   + G               FYSGD+E
Sbjct: 385 SLDNWDSDMVYGGKQHKRSDDSCSQLAFYSGDEE 418


>GSVIVT01037628001 assembled CDS
          Length = 343

 Score =  219 bits (558), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 132/166 (79%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K AEAVRIKCLGVPT+DM+NVC  LEDK  GKII+R+   ++LYRGRNY+PK RPV+PLM
Sbjct: 170 KRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPVVPLM 229

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+P+ PIYP+L+K   DGL+ +ETKEMR RGL +P + KL KNG Y ++V  VR+AF +
Sbjct: 230 LWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFRS 289

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKD 166
            E+VR+DC  +  SD K+IG KLRDLVPC+ + F+ EQI++W+GK+
Sbjct: 290 EEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWKGKN 335


>GSVIVT01015331001 assembled CDS
          Length = 723

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 125/177 (70%), Gaps = 4/177 (2%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K     +IKC GV TVDM NV  QLE+KT GK+I+   G L L+RGRNYN + RP  PLM
Sbjct: 283 KRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLM 342

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+P  P+YPRL++   +GL+++E   MRK+G  +  + KLAKNG Y  LV  VR+AF  
Sbjct: 343 LWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEE 402

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK----PPEDG 173
            ELVRI+CQGL  SDY+KIG KL+DLVPC+L++FE E I++WRG D+K     PEDG
Sbjct: 403 CELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDG 459


>GSVIVT01013770001 assembled CDS
          Length = 561

 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 120/168 (71%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K     +++C GVPT+DM NVC  LE+KT GKIIHR  G + L+RGRNYN + RP  P+M
Sbjct: 235 KRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVM 294

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
           +W+P  P+YP+LI+   +GL+  E  E+R +G  +  + +L KNG Y SLV  VRDAF  
Sbjct: 295 LWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEG 354

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK 168
           + LV+IDC+G+  SDYKKIG KL++LVPC+L++F+ EQI+ WRG  +K
Sbjct: 355 SPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWK 402


>GSVIVT01013781001 assembled CDS
          Length = 422

 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 36/168 (21%)

Query: 1   KHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLM 60
           K     ++ C GVPT+DM NVC  LE+KT GKIIHR  G + L+RGRNYN          
Sbjct: 102 KRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYN---------- 151

Query: 61  MWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLT 120
                                      +   G  +  + +L KNG Y SLV  VRDAF  
Sbjct: 152 --------------------------YLANEGENLIPICRLVKNGVYISLVKDVRDAFEG 185

Query: 121 NELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK 168
           + LV+IDC+G+  SDYKKIG KL++ VPC+L++F+ EQI+ WRG  +K
Sbjct: 186 SPLVKIDCKGMHASDYKKIGAKLKESVPCVLLSFDDEQILTWRGHGWK 233