Jatropha Genome Database

JcCB0269491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269491.10 - phase: 0 /pseudo/partial
         (452 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022252001 assembled CDS                                       102   3e-22

>GSVIVT01022252001 assembled CDS
          Length = 206

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 9   LNLKSGFLLNRRFIASMHPFPPANHRRYPA--PMQLSFPFRAKTVNRQETN---IPAVLE 63
           L LK  + L +      +P  P  +  +P   P + +  F   + + ++T+   + AVLE
Sbjct: 3   LELKPSYFLTKTAFYFQNPQSPIPNTAFPPLLPRRKTAYFPDTSFSLRKTSFRAVSAVLE 62

Query: 64  TASVATENQSDSPVRIVALVGKGSISPLKCATWEEVMLHTAKRLKWVDEGYDMLVFTDNL 123
           T      +Q   PVRIVALVG GS+SPLKCA W EVMLHTA+RLKWVDEG++MLVFTDNL
Sbjct: 63  TNETPLADQLAPPVRIVALVGDGSVSPLKCAPWVEVMLHTAQRLKWVDEGFEMLVFTDNL 122