Jatropha Genome Database

JcCB0268641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0268641.10 - phase: 2 /partial
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021521001 assembled CDS                                        67   6e-12
GSVIVT01012760001 assembled CDS                                        49   1e-06

>GSVIVT01021521001 assembled CDS
          Length = 1323

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 55   LVEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIP--- 111
            LV G  V  S+AP++  IFA++GDI ANC +K  + R  L+E +  V+  +Q  + P   
Sbjct: 1083 LVRGVPVSPSIAPMVEEIFAEHGDITANCLFKDQAFRGYLVEGLVTVMQLMQ--EYPARK 1140

Query: 112  LTLSEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMR 154
            LT  + R +  +++DLE  ++ + WL + +E +     + E R
Sbjct: 1141 LTHDDFRFMYRKLEDLERVKVNVGWLREQIEALGPFLNVVEYR 1183


>GSVIVT01012760001 assembled CDS
          Length = 391

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDI-PLTL 114
           V+G     +   +L  IF KYGDI A+C + +P  RA  L  +  +V  +Q      L+ 
Sbjct: 239 VQGPGFSPAGYSILEQIFTKYGDITADCCFTAPQFRAQFLASIVKIVQLMQQHTARELSD 298

Query: 115 SEIRVLQNEMKDLESTRLKLSWL 137
           ++I  + + + DLE  ++K+ WL
Sbjct: 299 ADISFICSTLSDLERAQVKVDWL 321