Jatropha Genome Database

JcCB0267821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0267821.20 + phase: 0 
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033254001 assembled CDS                                       182   1e-46
GSVIVT01011976001 assembled CDS                                       173   7e-44
GSVIVT01008216001 assembled CDS                                       166   1e-41
GSVIVT01013458001 assembled CDS                                       147   3e-36
GSVIVT01007074001 assembled CDS                                       122   1e-28
GSVIVT01036602001 assembled CDS                                       117   4e-27
GSVIVT01009566001 assembled CDS                                        91   3e-19

>GSVIVT01033254001 assembled CDS
          Length = 279

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 118/189 (62%), Gaps = 8/189 (4%)

Query: 63  PIITPTCKMLGNGLHDKYIHG-GTRMTGTLFGHRKTRINLAIQENPXXXXXXXXXXXXXX 121
           P I PTC+ L    H       G ++TGTLFGHR+  ++ A+Q++P              
Sbjct: 91  PTIIPTCRWLSIPNHLSITPSLGRKVTGTLFGHRRGHVSFAVQDDPRSEPVLLLELATST 150

Query: 122 GKLLQDMGMGLVRIALECEK--RRNEKTKIIEEPIWTMYCNGRKSGYGVKREPTDEDLVV 179
             L+++M  GLVRIALECEK   R    K+ +EP+WTMYCNGRK GY + RE  + D  V
Sbjct: 151 STLVKEMSSGLVRIALECEKVAARGRPVKLFQEPMWTMYCNGRKCGYAMSRECGEFDRHV 210

Query: 180 MQILHVISMGAGVIPEDGDH-----LDGELTYMRAHFERVVGSKDSETYYMMNPDGNNGP 234
           +  +  +S GAGVIP D +      ++GE+ YMRA FERVVGS+DSE +YMMNPDG  GP
Sbjct: 211 LSTVQSVSAGAGVIPTDDNRKSIVGVEGEMLYMRARFERVVGSRDSEAFYMMNPDGTGGP 270

Query: 235 ELTIFFVRI 243
           EL+IF +RI
Sbjct: 271 ELSIFLLRI 279


>GSVIVT01011976001 assembled CDS
          Length = 262

 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 112/163 (68%), Gaps = 3/163 (1%)

Query: 84  GTRMTGTLFGHRKTRINLAIQENPXXXXXXXXXXXXXXGKLLQDMGMGLVRIALECEKRR 143
           GTR+ GTLFG+R+  ++ A QE+P                L+++M  GLVRIALEC+K+ 
Sbjct: 100 GTRVIGTLFGYRRGHVHFAFQEDPKSHPAFLMELATSTSVLVREMASGLVRIALECDKKV 159

Query: 144 NEK--TKIIEEPIWTMYCNGRKSGYGVKREPTDEDLVVMQILHVISMGAGVIPEDGDH-L 200
             K  T+++EEP+W  YCNG+K GY +KRE   E+  V++ +  ISMGAGV+P +G+   
Sbjct: 160 EMKKGTRLLEEPLWRTYCNGKKCGYAMKRECGAEEWKVLKAVEPISMGAGVLPGNGETGS 219

Query: 201 DGELTYMRAHFERVVGSKDSETYYMMNPDGNNGPELTIFFVRI 243
           +GEL YMRA FERVVGSKDSE +YMMNPD   GPEL+I+ +R+
Sbjct: 220 EGELMYMRAKFERVVGSKDSEAFYMMNPDSTGGPELSIYLLRV 262


>GSVIVT01008216001 assembled CDS
          Length = 254

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 4/166 (2%)

Query: 82  HG-GTRMTGTLFGHRKTRINLAIQENPXXXXXXXXXXXXXXGKLLQDMGMGLVRIALECE 140
           HG G R+ GTLFG+R+  ++ A Q++P                L+++M  GLVRIALEC+
Sbjct: 89  HGLGPRVVGTLFGNRRGHVHFAFQKDPTSQPAFLIELATPISGLVREMASGLVRIALECD 148

Query: 141 KRRNEKT-KIIEEPIWTMYCNGRKSGYGVKREPTDEDLVVMQILHVISMGAGVIPEDGDH 199
           K   +K+ +++EEP+W  YCNG+K G+  KRE   ++  V++ +  ISMGAGV+P +G  
Sbjct: 149 KEEEKKSVRLLEEPLWRTYCNGKKCGFATKRECGPKEWNVLKAVEPISMGAGVLPGEGPE 208

Query: 200 L--DGELTYMRAHFERVVGSKDSETYYMMNPDGNNGPELTIFFVRI 243
              DGEL YMRA FERV+GS+DSE +YMMNPD N  PEL+I+ +R+
Sbjct: 209 TGSDGELMYMRAKFERVIGSRDSEAFYMMNPDSNGAPELSIYLLRV 254


>GSVIVT01013458001 assembled CDS
          Length = 221

 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 3/163 (1%)

Query: 82  HGGTRMTGTLFGHRKTRINLAIQENPXXXXXXXXXXXXXXGKLLQDMGMGLVRIALECEK 141
           H  T +TGT FG+RK R++  +Q++                 L ++M  GL+RIALEC++
Sbjct: 59  HAST-VTGTFFGYRKGRVSFCLQDDTRSTPLLLLEFAVPTAYLAREMQYGLLRIALECDR 117

Query: 142 RRNEK--TKIIEEPIWTMYCNGRKSGYGVKREPTDEDLVVMQILHVISMGAGVIPEDGDH 199
           ++       +   P+W+MYCNGRK G+ V+R+ T  D+ V++++  +S+GAGV+P     
Sbjct: 118 QKQASNCCSLFNVPVWSMYCNGRKVGFAVRRQMTVSDVNVLKLMQSVSVGAGVLPVAPKS 177

Query: 200 LDGELTYMRAHFERVVGSKDSETYYMMNPDGNNGPELTIFFVR 242
            DG+L Y+RA FERV+GS DSE+++M+NP G++G EL+IF +R
Sbjct: 178 DDGDLLYLRASFERVIGSPDSESFHMINPVGSSGQELSIFLLR 220


>GSVIVT01007074001 assembled CDS
          Length = 234

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 17/196 (8%)

Query: 64  IITPTCKMLGNGLH----DKYIH----------GGTRMTGTLFGHRKTRINLAIQENPXX 109
           ++ P C  +    H    + Y+H            T +TGT+FG+R+ +++   Q N   
Sbjct: 37  LLIPRCNCISLEEHRIEEENYLHRYFYSQPTFISSTVVTGTIFGYRRGKVSFCTQTNSKS 96

Query: 110 XXXXXXXXXXXXGKLL-QDMGMGLVRIALECEKRRN--EKTKIIEEPIWTMYCNGRKSGY 166
                         +L ++M  G++RI LE    +N  +   ++  P+WTM CNGRK G+
Sbjct: 97  TNPILLLELAVPTAILAREMQGGILRITLESIAAKNGMDSYTLLSIPVWTMCCNGRKVGF 156

Query: 167 GVKREPTDEDLVVMQILHVISMGAGVIPEDGDHLDGELTYMRAHFERVVGSKDSETYYMM 226
            VKR P+  D+ V+ ++  + +GAG+I     + D EL Y+RA+FERV  S +SE+++++
Sbjct: 157 AVKRTPSKADMNVLGLMGSVIVGAGIISAKELNCDDELMYLRANFERVRSSSNSESFHLI 216

Query: 227 NPDGNNGPELTIFFVR 242
           +PDGN G EL IFF R
Sbjct: 217 DPDGNIGQELGIFFFR 232


>GSVIVT01036602001 assembled CDS
          Length = 194

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 101/214 (47%), Gaps = 61/214 (28%)

Query: 35  ISLQQPTGKDSS-KSAKLLXXXXXXXXXXPIITPTCK---MLGNG-LHDKYIHGGTRMTG 89
           ++LQQP+ K +S KS KL           PII+P CK   +L N  L+D +IHGGTRMTG
Sbjct: 37  VALQQPSHKKASLKSTKLFRHFRSVFRSFPIISPACKIPVLLHNSRLNDVHIHGGTRMTG 96

Query: 90  TLFGHRKTRINLAIQENPXXXXXXXXXXXXXXGKLLQDMGMGLVRIALECEKRRNEKTKI 149
           TLFGHRK R++LAIQE+P               KLLQ++G+GLVRIALECEK        
Sbjct: 97  TLFGHRKGRVSLAIQESPRCFPIFLLEMAIPTSKLLQELGLGLVRIALECEKHL------ 150

Query: 150 IEEPIWTMYCNGRKSGYGVKREPTDEDLVVMQILHVISMGAGVIPEDGDHLDGELTYMRA 209
                                   D +L  M+      +G+          D E  YM  
Sbjct: 151 -----------------------PDGELTYMRAHFQRVIGSK---------DSETYYM-- 176

Query: 210 HFERVVGSKDSETYYMMNPDGNNGPELTIFFVRI 243
                           MNPD N GPEL+IFFVRI
Sbjct: 177 ----------------MNPDSNTGPELSIFFVRI 194


>GSVIVT01009566001 assembled CDS
          Length = 503

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 9/104 (8%)

Query: 133 VRIALECEKR---RNEKTKIIEEPIWTMYCNGRKSGYGVKREP-TDEDLVVMQILHVISM 188
           +R    C  R   R+      +   WT++    K GY ++R+  +DE+L VMQ+L  +SM
Sbjct: 116 IRRCFPCSGRLLMRSAPNPPADSFEWTIF---GKIGYSIRRKQMSDEELHVMQLLRGVSM 172

Query: 189 GAGVIP--EDGDHLDGELTYMRAHFERVVGSKDSETYYMMNPDG 230
           GAGV+P   D D  DGELTYMRA FERVVGSKDSE  +M+NPDG
Sbjct: 173 GAGVLPCQSDKDTADGELTYMRARFERVVGSKDSEALHMINPDG 216