Jatropha Genome Database

JcCB0267531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0267531.10 + phase: 2 /pseudo/partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008514001 assembled CDS                                       390   e-109

>GSVIVT01008514001 assembled CDS
          Length = 287

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/226 (84%), Positives = 207/226 (91%), Gaps = 5/226 (2%)

Query: 20  SGCCSSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISA 79
           +G  SSSLWLA NPSKRWGELFFL YTPFWLTLCLG+VVPYKLYE+FTELEYLLL ++SA
Sbjct: 4   TGAASSSLWLATNPSKRWGELFFLLYTPFWLTLCLGIVVPYKLYENFTELEYLLLGLVSA 63

Query: 80  VPSFLIPMIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASY 139
           VPSFLIPM F G+ D SL  KDRYWVKAS     LWI+IFSYVGNYFWTHYFFTVLGASY
Sbjct: 64  VPSFLIPMQFAGEVDRSLCLKDRYWVKAS-----LWIVIFSYVGNYFWTHYFFTVLGASY 118

Query: 140 TFPSWKMNDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALA 199
           TFPSWKMN+VPHTTFLLTHVCFLFYH++SN+TLRRLRH+IA LP+K++W TEAAWILALA
Sbjct: 119 TFPSWKMNNVPHTTFLLTHVCFLFYHMSSNITLRRLRHSIADLPEKIQWFTEAAWILALA 178

Query: 200 YFIAYLETLAISNFPYYEFVDRASMYTVGSLFYAIYFIVSFPMFLR 245
           YFIAYLET+AISNFPYY+FVDRASMY VGSLFYAIYFIVSFPMFLR
Sbjct: 179 YFIAYLETIAISNFPYYQFVDRASMYKVGSLFYAIYFIVSFPMFLR 224