Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0265081.10 + phase: 2 /partial
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018995001 assembled CDS                                       222   1e-58

>GSVIVT01018995001 assembled CDS
          Length = 688

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 157/228 (68%), Gaps = 7/228 (3%)

Query: 1   FLLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTAL 60
           FLLS+PLEER K LL EGPPV RFS LKHFAP+++VEDVL V+ KH  LVQGLW P+++L
Sbjct: 335 FLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSL 394

Query: 61  LFPDSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRDW 120
           LFP  + V  P ARDYILLLFSK  +I+ SQ+  +P  L + ++ FL++ AVERPSFRDW
Sbjct: 395 LFPGGQGV-APLARDYILLLFSKGPLINYSQV-DVPGSLNKALKGFLSILAVERPSFRDW 452

Query: 121 KFKESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGK-QNDKRQPTLAHNLTK 179
           KFKE  D +FMKLHP++V++Q  +WE +EK++T  +    + G    +  +P++A+    
Sbjct: 453 KFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGT 512

Query: 180 ELDPHKIAPKSASVNRVPI-RTTITSESREALLKVLPKVLQTHKVCRY 226
                K    + + N  P+ RT +++E+REAL K L +V + HKVC +
Sbjct: 513 ST---KSDGATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSF 557