Jatropha Genome Database

JcCB0263761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0263761.10 - phase: 0 /partial
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027599001 assembled CDS                                       367   e-102
GSVIVT01010540001 assembled CDS                                       114   3e-26
GSVIVT01032508001 assembled CDS                                        89   1e-18
GSVIVT01031344001 assembled CDS                                        61   7e-10

>GSVIVT01027599001 assembled CDS
          Length = 667

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/241 (74%), Positives = 197/241 (81%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYVRKPHVRLTFFRTI 60
           MGVGG FW+LLKPYARP+G D++R+KRVAVDLS+WIVQ ETA K+ VR PH+RLTFFRTI
Sbjct: 1   MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKANVRNPHLRLTFFRTI 60

Query: 61  NLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSVERNRVFSKXX 120
           NLFSKFGAFPVFVVDG PSPLK            GID+S LPV EEGVSVERN  FS+  
Sbjct: 61  NLFSKFGAFPVFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERNAEFSRRV 120

Query: 121 XXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCIRPNT 180
                     G+PVL A  EAEALCAQLN EG VDACITADSDAFLFGA+CVIKC+RPN 
Sbjct: 121 QECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLRPNC 180

Query: 181 KEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSEDEIL 240
           KEP ECY MSDIE+GLGLKRKHLIAISLLVGND+DL+GVQGIG+DTA+RFVQ FSEDEIL
Sbjct: 181 KEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQGFSEDEIL 240

Query: 241 N 241
           N
Sbjct: 241 N 241


>GSVIVT01010540001 assembled CDS
          Length = 565

 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 121/250 (48%), Gaps = 11/250 (4%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYVR---KPHVRLTFF 57
           MGV    WD+L+   +      L++KRV +DLS W+VQ +   KS+     K +++  F 
Sbjct: 1   MGVKN-LWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLFH 59

Query: 58  RTINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGV-SVERN--R 114
           R   L +      +FV DG    +K            G +V+        V S+ RN   
Sbjct: 60  RLRALIA-LNCSLLFVTDGSIPAIKLATYRRRLNS--GTEVTRDETNSHNVPSLRRNMGS 116

Query: 115 VFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIK 174
            FS             G+P L    EAEA CA LN E L D C T+DSD FLFGA  V +
Sbjct: 117 EFSCMIKEAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYR 176

Query: 175 CIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTF 234
            I         CY+M+DIE+ LG  R  LI ++LL+G+D+   GV G G ++A + V++ 
Sbjct: 177 DICLGEGGYVVCYEMADIESTLGFGRNSLITLALLLGSDYS-QGVHGFGPESACQIVKSV 235

Query: 235 SEDEILNGFA 244
            E+ +L   A
Sbjct: 236 GEEVVLKKIA 245


>GSVIVT01032508001 assembled CDS
          Length = 1449

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 96  IDVSSLPVAEEGVSVERNR--VFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGL 153
           +D   L + +E   +ERN   V S+           FG+P + A  EAEA CA +    L
Sbjct: 773 LDQECLNLGDEQRKLERNADCVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANL 832

Query: 154 VDACITADSDAFLFGAECVIKCIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGND 213
           VD  +T DSD FLFGA  V K I  + ++  E Y M DIE  LGL R+ +I ++LL+G+D
Sbjct: 833 VDGVVTDDSDVFLFGARSVYKNIF-DERKYVETYFMKDIETELGLNREKVIRMALLLGSD 891

Query: 214 HDLSGVQGIGVDTALRFVQTFSEDEILNGFASY 246
           +   GV GIG+  A+  + +F E++ L+ F  +
Sbjct: 892 Y-TEGVSGIGIVNAIEVLNSFPEEDGLHKFREW 923



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 1  MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIK----SYVRKPHVRLTF 56
          MGV G  W+LL P  R    + L  KR+A+D S W++Q   A++      VR  H+ L F
Sbjct: 1  MGVHG-LWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHL-LGF 58

Query: 57 FRTINLFSKFGAFPVFVVDGIPSPLK 82
          FR I         PVFV DG    LK
Sbjct: 59 FRRICKLLFLRTKPVFVFDGGTPALK 84


>GSVIVT01031344001 assembled CDS
          Length = 416

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 51  HVRLTFFRTINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSV 110
           H++  F RTI L  + G  PV+V DG P  LK                  L  A E  + 
Sbjct: 64  HLQGMFSRTIRLL-EAGLKPVYVFDGKPPDLKKQELAKRFSRRADA-TEDLTEALETGNK 121

Query: 111 ERNRVFSKXXXXXXXXXXX--------FGMPVLTANGEAEALCAQLNREGLVDACITADS 162
           E    FSK                    G+PV+ A  EAEA CA L + G V A  + D 
Sbjct: 122 EEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDM 181

Query: 163 DAFLFGAECVIK-CIRPNTKE-PFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQ 220
           D+  FGA   ++  + P++++ P   + ++ I   L L     I + +L G D+    ++
Sbjct: 182 DSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDY-CDSIR 240

Query: 221 GIGVDTALRFVQ 232
           GIG  TAL+ ++
Sbjct: 241 GIGGQTALKLIR 252