Jatropha Genome Database

JcCB0262451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0262451.10 - phase: 0 /pseudo
         (90 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011647001 assembled CDS                                       121   9e-29
GSVIVT01001094001 assembled CDS                                        57   2e-09
GSVIVT01008660001 assembled CDS                                        53   3e-08

>GSVIVT01011647001 assembled CDS
          Length = 262

 Score =  121 bits (303), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 67/78 (85%)

Query: 1  MEKTQEITVTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFV 60
          ME+  E  +TQMRKSV+KLGS+TE   D TLMRFLIARSMD EKAAKMFVQWQKWR+A V
Sbjct: 1  MEQINESALTQMRKSVQKLGSSTEKYGDPTLMRFLIARSMDSEKAAKMFVQWQKWRAALV 60

Query: 61 PNGFIPDSDVLDELQTRK 78
          P+GF+P+S++ +EL+TRK
Sbjct: 61 PDGFVPESEIREELETRK 78


>GSVIVT01001094001 assembled CDS
          Length = 246

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%)

Query: 9  VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGFIPDS 68
          V  MR  VE    +++   D  + RFL AR +D +KA+ + +++  WR AF+PNG+I  S
Sbjct: 22 VGLMRARVESADPSSKDLDDFMIRRFLRARDLDIDKASALLLKYLGWRRAFMPNGYISAS 81

Query: 69 DVLDELQTRK 78
          ++ +EL   K
Sbjct: 82 EIPNELAQNK 91


>GSVIVT01008660001 assembled CDS
          Length = 256

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 1   MEKTQEITVTQMRKSVEK-----LGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKW 55
           ME+T+   V+ MR  VE         +++   D  + RFL AR +D EKA+ +F+++ KW
Sbjct: 22  MEQTK---VSLMRTYVESQDPSSRDPSSQKADDLMIRRFLRARDLDVEKASALFLRYLKW 78

Query: 56  RSAFVPNGFIPDSDVLDELQTRK 78
           R  FVPNG I  S V +E+   K
Sbjct: 79  RQTFVPNGSISLSQVRNEVAQNK 101