Jatropha Genome Database

JcCB0261921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0261921.10 + phase: 0 /partial
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004775001 assembled CDS                                       251   1e-67
GSVIVT01001275001 assembled CDS                                       247   2e-66
GSVIVT01018628001 assembled CDS                                       239   6e-64
GSVIVT01005878001 assembled CDS                                       141   2e-34
GSVIVT01009010001 assembled CDS                                       132   1e-31
GSVIVT01028707001 assembled CDS                                       114   3e-26
GSVIVT01023680001 assembled CDS                                       112   1e-25
GSVIVT01027085001 assembled CDS                                       102   1e-22

>GSVIVT01004775001 assembled CDS
          Length = 383

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 145/170 (85%), Gaps = 10/170 (5%)

Query: 1   MDMKSSSSSPVLTDPAPINKSRLCIHSNLLAYPQSGASFSSGKHINIPRKKPGKLDDVRS 60
           MD+KS+ +SPVLTDPAP+NKSRL I S           FSSGK++ IPRKKPGKLDDVRS
Sbjct: 1   MDLKSNHASPVLTDPAPVNKSRLGIPS----------GFSSGKYVIIPRKKPGKLDDVRS 50

Query: 61  NGWLDAMKSSSPPRKKHIKDFSIELASDETDIADYSWMLKYPSALNSFEQITNFAKKKKI 120
           NGWLDAMKSSSPPRKK IKDF++E+A+D+TD    SWMLKYPSALNSFE+I ++AK KKI
Sbjct: 51  NGWLDAMKSSSPPRKKLIKDFNVEVATDDTDNVTSSWMLKYPSALNSFEKIISYAKSKKI 110

Query: 121 AIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFPTAIISGRSRDKV 170
           A+FLDYDGTLSPIVDDPD+ALMS  MRS V+N+AKYFPTAIISGRSRDKV
Sbjct: 111 AMFLDYDGTLSPIVDDPDRALMSDAMRSTVKNLAKYFPTAIISGRSRDKV 160


>GSVIVT01001275001 assembled CDS
          Length = 406

 Score =  247 bits (631), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 144/170 (84%), Gaps = 10/170 (5%)

Query: 1   MDMKSSSSSPVLTDPAPINKSRLCIHSNLLAYPQSGASFSSGKHINIPRKKPGKLDDVRS 60
           MD+KS+ +SPVLTDPAP+NKSRL I S           FSSGK++ IPRKKPGKLDDVRS
Sbjct: 1   MDLKSNHASPVLTDPAPVNKSRLGIPSG----------FSSGKYVIIPRKKPGKLDDVRS 50

Query: 61  NGWLDAMKSSSPPRKKHIKDFSIELASDETDIADYSWMLKYPSALNSFEQITNFAKKKKI 120
           NGWLDAMKSSSPPRKK IKDF++E+A+D+TD    SWMLKYPSALNSFE+I ++A+ KKI
Sbjct: 51  NGWLDAMKSSSPPRKKLIKDFNVEVATDDTDNVTSSWMLKYPSALNSFEKIISYAQSKKI 110

Query: 121 AIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFPTAIISGRSRDKV 170
           A+FLDYDGTLSPIVDDPD+ALMS  MRS V+N+AK FPTAIISGRSRDKV
Sbjct: 111 AMFLDYDGTLSPIVDDPDRALMSDAMRSTVKNLAKCFPTAIISGRSRDKV 160


>GSVIVT01018628001 assembled CDS
          Length = 385

 Score =  239 bits (609), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 138/170 (81%)

Query: 1   MDMKSSSSSPVLTDPAPINKSRLCIHSNLLAYPQSGASFSSGKHINIPRKKPGKLDDVRS 60
           MD+KS+ SSPVLTDP P+NKSR  I SNLL Y   GA+FSS   + IPRKK G LDDVRS
Sbjct: 1   MDLKSNHSSPVLTDPPPVNKSRFGIRSNLLPYSPPGAAFSSTLFLTIPRKKNGVLDDVRS 60

Query: 61  NGWLDAMKSSSPPRKKHIKDFSIELASDETDIADYSWMLKYPSALNSFEQITNFAKKKKI 120
           + WLDAMKSSSP  KK  KDF+  LAS +TD+   +W+LKYPSAL SFEQITN+AK K+I
Sbjct: 61  SSWLDAMKSSSPTHKKITKDFNTVLASTDTDVTYRTWLLKYPSALKSFEQITNYAKGKRI 120

Query: 121 AIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFPTAIISGRSRDKV 170
           A+FLDYDGTLSPIVD+PD+A MS  MR+ VRNVAK+FPTAIISGRSRDKV
Sbjct: 121 ALFLDYDGTLSPIVDNPDRAFMSDCMRATVRNVAKFFPTAIISGRSRDKV 170


>GSVIVT01005878001 assembled CDS
          Length = 365

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 91/131 (69%), Gaps = 12/131 (9%)

Query: 40  SSGKHINIPRKKPGKLDDVRSNGWLDAMKSSSPPRKKHIKDFSIELASDETDIADYSWML 99
           + G  INIP KK G     R N W+D+M++SSP R K     S    SD+      SWML
Sbjct: 39  TQGGCINIPPKKVG--GGARINAWVDSMRASSPTRVK-----SAASLSDQN-----SWML 86

Query: 100 KYPSALNSFEQITNFAKKKKIAIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFPT 159
           ++PSALN FEQI   +K K+I +FLDYDGTLSPIVDDPD+A MS  MR+AVR +A+YFPT
Sbjct: 87  RHPSALNMFEQIIEASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDAMRAAVRQLARYFPT 146

Query: 160 AIISGRSRDKV 170
           AI+SGR RDKV
Sbjct: 147 AIVSGRCRDKV 157


>GSVIVT01009010001 assembled CDS
          Length = 375

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 85/108 (78%), Gaps = 8/108 (7%)

Query: 63  WLDAMKSSSPPRKKHIKDFSIELASDETDIADYSWMLKYPSALNSFEQITNFAKKKKIAI 122
           W+D+M++SSP    HIK  S  L+  E   A  SWML +PSAL +FEQITN ++ K+I +
Sbjct: 65  WVDSMRASSP---THIK--STPLSDSE---ALSSWMLHHPSALRTFEQITNASEGKQIVM 116

Query: 123 FLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFPTAIISGRSRDKV 170
           FLDYDGTLSPIV+DPDQA MS +MR+AV++VA+YFPTAI+SGR RDKV
Sbjct: 117 FLDYDGTLSPIVEDPDQAFMSKEMRAAVKDVARYFPTAIVSGRCRDKV 164


>GSVIVT01028707001 assembled CDS
          Length = 353

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query: 96  SWMLKYPSALNSFEQITNFAKKKKIAIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAK 155
           SWM+++PSA+ SF+Q+ + AK K I +FLDYDGTLSPIVDDPD A MS +MRSAVR +AK
Sbjct: 60  SWMMEHPSAITSFDQMVSKAKGKSIVVFLDYDGTLSPIVDDPDLAFMSDEMRSAVREIAK 119

Query: 156 YFPTAIISGRSRDKV 170
            FPTAIISGRSR+KV
Sbjct: 120 NFPTAIISGRSREKV 134


>GSVIVT01023680001 assembled CDS
          Length = 111

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 67  MKSSSPPRKKHIKDFSIELASDETDIADYSWMLKYPS-ALNSFEQITNFAKKKKIAIFLD 125
           MKSSSPPRKK +KDF++++A+D+ D    SWMLKYPS ALNSFE+I N+ K KKI +FLD
Sbjct: 1   MKSSSPPRKKFLKDFNVKVATDDIDNVTSSWMLKYPSSALNSFEKIINYPKSKKIVMFLD 60

Query: 126 YDGTLSPIVDDPDQALMS 143
           YDGTLSP+VD PD+ALMS
Sbjct: 61  YDGTLSPVVDGPDRALMS 78


>GSVIVT01027085001 assembled CDS
          Length = 289

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query: 99  LKYPSALNSFEQITNFAKKKKIAIFLDYDGTLSPIVDDPDQALMSSDMRSAVRNVAKYFP 158
           +++PSAL+ FEQI +  + KKI +FLDYDGTLS IVDDPD+A M+  MRSAVR VA+ +P
Sbjct: 1   MEHPSALDEFEQIMSAIQHKKIVVFLDYDGTLSDIVDDPDKAFMTETMRSAVREVAECYP 60

Query: 159 TAIISGRSRDKV 170
           TAIISGR R+KV
Sbjct: 61  TAIISGRRREKV 72