Jatropha Genome Database

JcCB0259591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.20 - phase: 0 
         (445 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007996001 assembled CDS                                       417   e-117
GSVIVT01037438001 assembled CDS                                       159   2e-39

>GSVIVT01007996001 assembled CDS
          Length = 351

 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/358 (58%), Positives = 252/358 (70%), Gaps = 56/358 (15%)

Query: 88  EFSIPLHLIDRHVTRMKIISPSNLTVDFGSKTLKPHESIPMLRREVLDSFLRSRAQSNGA 147
           +F +PL +IDR                      +PHE I M+RREVLDS+LR RA ++GA
Sbjct: 50  KFDLPLDIIDR----------------------RPHEYIGMVRREVLDSYLRERASASGA 87

Query: 148 QLIPALVTHLEVPSSSTEPYIIHHTINNTKQTLAVDVIIGADGANSKVAKSINAGNYTCA 207
                                             VD +IGADGANS+VAK I AG+Y  A
Sbjct: 88  ---------------------------------TVDAVIGADGANSRVAKFIGAGDYDYA 114

Query: 208 IAFQERIRLPDEKMEYYQNLAEMYVGDDVSPDFYAWVFPKCDHVAVGTGTVCAKPDIKLY 267
           IAFQERI++PD+KM YY+NLAEMYVGDDVSPDFY WVFPKCDHVAVGTGTV  K DIK +
Sbjct: 115 IAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKSDIKKF 174

Query: 268 QKGIRERVRQKINGGKVIKVEAHPIPEHPRPVRVRGRVALVGDAAGYVTKCSGEGIYFAA 327
           Q   R R ++KI GGK+I+VEAHPIPEHPRP R+ GRVALVGDAAGYVTKCSGEGIYFAA
Sbjct: 175 QLATRLRAKEKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAA 234

Query: 328 KSGRMCGEAIVKASEGGEKRVKEEDLKRGYLKEWDKKYYSTFRFLDLLQRVFYGSNMARE 387
           KSGRMC EAIV+ SE G++ V E DL++ YL++WDK Y+ T++ LD+LQ+VFY SN ARE
Sbjct: 235 KSGRMCAEAIVEGSENGKRMVDEGDLRK-YLEKWDKTYWPTYKVLDVLQKVFYRSNPARE 293

Query: 388 ALVELCGDEYVQRMTFDSYLYKKLANGDRWEDVKMGLNTIGSLVRCRILGREMEALKV 445
           A VE+C DEYVQ+MTFDSYLYKK+  G+  ED+K+ +NTIGSLVR   L REM+ + V
Sbjct: 294 AFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKMSV 351


>GSVIVT01037438001 assembled CDS
          Length = 289

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 86/103 (83%), Gaps = 3/103 (2%)

Query: 343 GGEKRVKEEDLKRGYLKEWDKKYYSTFRFLDLLQRVFYGSNMAREALVELCGDEYVQRMT 402
           GG +R   EDL+R YLKEWD KY  T+R LDLL RVFYGSN AREALVELCG+EYVQRMT
Sbjct: 190 GGRRR---EDLRREYLKEWDGKYLVTYRLLDLLHRVFYGSNAAREALVELCGNEYVQRMT 246

Query: 403 FDSYLYKKLANGDRWEDVKMGLNTIGSLVRCRILGREMEALKV 445
           F+SYLYK+LA GD WED KM  NT GSL+RC+I+GR+++AL+V
Sbjct: 247 FESYLYKRLAEGDGWEDAKMVFNTFGSLIRCKIVGRDVQALRV 289



 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 66/94 (70%), Gaps = 1/94 (1%)

Query: 34  LSGRKLRXXXXXXXXXXXXXXXXXXXXXIETFLFERSTSTAKPCGGAIPLCMIDEFSIPL 93
           LSGRKLR                     IETFLFERS +++KPCGGAIPLCM++EFSIP 
Sbjct: 79  LSGRKLRAAVIGGGPAGSSAAETLAAGGIETFLFERSPASSKPCGGAIPLCMLEEFSIPP 138

Query: 94  HLIDRHVTRMKIISPSNLTVDFGSKTLKPHESIP 127
            L+DR VTRMKIISPSNLTVDFG KTLKP++  P
Sbjct: 139 ELVDRRVTRMKIISPSNLTVDFG-KTLKPNDRGP 171