Jatropha Genome Database

JcCB0259591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.10 - phase: 0 /partial
         (81 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037440001 assembled CDS                                        60   2e-10

>GSVIVT01037440001 assembled CDS
          Length = 553

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 5/57 (8%)

Query: 25  RIVPKKEWGNTKVQLLANGEEMEGLEFKVKEMIMESCRLVFRKSGFAFKDDWARIIE 81
           R VP+  W +TKVQL     E+EGL  ++ E  +ESCR V R SGF F+D+WAR+++
Sbjct: 151 RRVPRSTWSSTKVQL-----ELEGLGAELTEAALESCRRVLRSSGFLFRDEWARVMK 202