Jatropha Genome Database

JcCB0257561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0257561.10 - phase: 0 
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003797001 assembled CDS                                       194   2e-50

>GSVIVT01003797001 assembled CDS
          Length = 147

 Score =  194 bits (492), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 109/118 (92%)

Query: 44  KVADRIVKLFAVDLDGQKREVVGLSGQTLLRALANCGLIDPASHRLEEIDACSAECEVSI 103
           KVADRIVK  A+D +G+KREV+GLSGQTLLRAL N GLIDP SHRL++I+AC AECE++I
Sbjct: 28  KVADRIVKFSAIDHEGKKREVLGLSGQTLLRALCNSGLIDPESHRLDDIEACGAECEINI 87

Query: 104 AQEWLEKLPPRSYDEEYVLKRNSRARVLNKHARLGCQVVLTPDLKGMVVAIPEPKPWD 161
           AQEWL++LPPR++DE+++LKR+SR+RVLNKH+RLGCQV+LT D+ GMVVA+PEP+PWD
Sbjct: 88  AQEWLDRLPPRTHDEQFILKRSSRSRVLNKHSRLGCQVLLTDDMDGMVVAVPEPRPWD 145