Jatropha Genome Database

JcCB0256761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0256761.10 - phase: 0 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015509001 assembled CDS                                       145   3e-36
GSVIVT01027692001 assembled CDS                                        91   1e-19

>GSVIVT01015509001 assembled CDS
          Length = 660

 Score =  145 bits (367), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/100 (69%), Positives = 79/100 (79%), Gaps = 6/100 (6%)

Query: 1   MDGKIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAVXXXXXXXXX 60
           MDGK+EIS+DKLP+KRL+AI+ENGAERFPTDVGYD+KRVSLIRRIDFAWAV         
Sbjct: 1   MDGKMEISLDKLPIKRLDAIEENGAERFPTDVGYDDKRVSLIRRIDFAWAV------EKD 54

Query: 61  XXXXXXXXXXXTTPWPWQSMVENLQLAHQELSIIIDLINT 100
                       TPWPWQS+VENL+LAHQELS+IIDLI+T
Sbjct: 55  TKKQKKASKEEATPWPWQSLVENLRLAHQELSVIIDLIST 94


>GSVIVT01027692001 assembled CDS
          Length = 269

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 47/49 (95%)

Query: 3   GKIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAV 51
           GK+EIS+DKLP+KRL+AI+ENG ERFPTDVGYD+K VSLIRRIDFAWAV
Sbjct: 68  GKMEISLDKLPIKRLDAIEENGVERFPTDVGYDDKWVSLIRRIDFAWAV 116