Jatropha Genome Database

JcCB0254931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0254931.10 - phase: 0 
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015516001 assembled CDS                                        89   3e-19
GSVIVT01017289001 assembled CDS                                        85   6e-18
GSVIVT01035831001 assembled CDS                                        80   2e-16
GSVIVT01018123001 assembled CDS                                        63   3e-11

>GSVIVT01015516001 assembled CDS
          Length = 130

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 45/45 (100%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA+EKKIMTSTVDM+DE+RGRP+QKAKIEILLGKTENF
Sbjct: 65  EILKNNGLAVEKKIMTSTVDMKDESRGRPIQKAKIEILLGKTENF 109


>GSVIVT01017289001 assembled CDS
          Length = 129

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/45 (88%), Positives = 43/45 (95%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA+EKKI TSTVDM+DE+RGRPVQKAKIEILLGKT NF
Sbjct: 65  EILKNNGLAVEKKITTSTVDMKDESRGRPVQKAKIEILLGKTANF 109


>GSVIVT01035831001 assembled CDS
          Length = 130

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 42/45 (93%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA+EK+I TSTVD+RDE  GRP+QKAKIEILLGKTENF
Sbjct: 66  EILKNNGLAVEKRITTSTVDIRDEFGGRPLQKAKIEILLGKTENF 110


>GSVIVT01018123001 assembled CDS
          Length = 131

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTEN 56
           EILK NG+A +KKI+TSTVDM+ E  GR VQKAKIEI+LGK E+
Sbjct: 61  EILKKNGVATQKKILTSTVDMKWETNGRTVQKAKIEIVLGKPED 104