Jatropha Genome Database

JcCB0252341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.30 + phase: 0 /pseudo
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004448001 assembled CDS                                       187   4e-48
GSVIVT01002068001 assembled CDS                                       185   1e-47

>GSVIVT01004448001 assembled CDS
          Length = 300

 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 122/185 (65%), Gaps = 9/185 (4%)

Query: 1   MESKALLSGLCSNSTFPAIQNNKKPLSLTFXXXXXXXXXGQSQNYVSFNTHQSISPPRVK 60
           ME++ LL G CSNS  P I+N KKP  + F           S+ + SF TH   +P  V 
Sbjct: 1   MEAQRLLHGFCSNSAIPPIRNPKKPFFMIFNPSLD-----HSKRWASFKTHHYDAPQTV- 54

Query: 61  SLSFKRLECANSSEKLGS-TGFHNEGYLNSGIKRKKLAVFVSGGGSNFKSVHEACIQGSV 119
           S S +RLEC NS E  G  TG   E  L SGI+RK LAVFVSGGGSNF+S+HEAC++GSV
Sbjct: 55  SWSKRRLECRNSVENAGGFTG--GEKGLESGIRRKNLAVFVSGGGSNFRSIHEACLRGSV 112

Query: 120 HGDVVAVVTNRKGCGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAALRFGXFLFVFLN 179
           HGD+V + TN+ GCGGAEYAR K IPV+LFP+ KDEP+ LSP DLVAALR     F+ L 
Sbjct: 113 HGDIVVLATNKSGCGGAEYARGKGIPVILFPKAKDEPEALSPNDLVAALRGFEVDFILLA 172

Query: 180 FELKF 184
             LK 
Sbjct: 173 GYLKL 177


>GSVIVT01002068001 assembled CDS
          Length = 1689

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 121/185 (65%), Gaps = 9/185 (4%)

Query: 1   MESKALLSGLCSNSTFPAIQNNKKPLSLTFXXXXXXXXXGQSQNYVSFNTHQSISPPRVK 60
           ME++ LL G CSNS  P IQN KKP  + F           S+ + SF TH   +P  V 
Sbjct: 1   MEAQRLLHGFCSNSAIPPIQNPKKPFFMIFNPSLD-----HSKRWASFKTHHYDAPQTV- 54

Query: 61  SLSFKRLECANSSEKLGS-TGFHNEGYLNSGIKRKKLAVFVSGGGSNFKSVHEACIQGSV 119
           S S + LEC NS E  G  TG   E  L SGI+RK LAVFVSGGGSNF+S+HEAC++GSV
Sbjct: 55  SWSKRSLECRNSVENAGGFTG--GEKGLESGIRRKNLAVFVSGGGSNFRSIHEACLRGSV 112

Query: 120 HGDVVAVVTNRKGCGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAALRFGXFLFVFLN 179
           HGD+V + TN+ GCGGAEYAR K IPV+LFP+ KDEP+ LSP DLVAALR     F+ L 
Sbjct: 113 HGDIVVLATNKSGCGGAEYARGKGIPVILFPKAKDEPEALSPNDLVAALRGFEVDFILLA 172

Query: 180 FELKF 184
             LK 
Sbjct: 173 GYLKL 177