Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.10 + phase: 1 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037763001 assembled CDS                                       145   3e-36
GSVIVT01031566001 assembled CDS                                       136   2e-33
GSVIVT01006249001 assembled CDS                                       132   4e-32

>GSVIVT01037763001 assembled CDS
          Length = 212

 Score =  145 bits (367), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 73/82 (89%)

Query: 18  EGEGATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYIL 77
           EG+G  EE KKSNHV+RKLEKRQQ  KLDPHIEEQF  GRL+A ISSRPGQCGRADGYIL
Sbjct: 131 EGDGPAEETKKSNHVVRKLEKRQQEHKLDPHIEEQFGSGRLLAAISSRPGQCGRADGYIL 190

Query: 78  EGKELEFYMKKIQRKKGKGAGA 99
           EGKELEFYMKKIQRKKGKG+ A
Sbjct: 191 EGKELEFYMKKIQRKKGKGSAA 212


>GSVIVT01031566001 assembled CDS
          Length = 214

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 69/75 (92%), Gaps = 1/75 (1%)

Query: 27  KKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFYM 86
           KKSNHVLRKLEKRQQ  +LDPHIEEQF  GRL+A ISSRPGQCGRADGYILEGKELEFYM
Sbjct: 140 KKSNHVLRKLEKRQQDHRLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYM 199

Query: 87  KKIQRKKGKG-AGAA 100
           KKIQRKKGKG AGAA
Sbjct: 200 KKIQRKKGKGSAGAA 214


>GSVIVT01006249001 assembled CDS
          Length = 92

 Score =  132 bits (331), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 66/74 (89%)

Query: 18 EGEGATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYIL 77
          EGE   EE KKS+HVLRKLEKRQ  RKLDPHIEEQF+ GRL+ACISSRPGQCGRADGYIL
Sbjct: 9  EGEAPVEETKKSSHVLRKLEKRQADRKLDPHIEEQFSSGRLLACISSRPGQCGRADGYIL 68

Query: 78 EGKELEFYMKKIQR 91
          EGKELEFY +KIQR
Sbjct: 69 EGKELEFYTRKIQR 82