Jatropha Genome Database

JcCB0250631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0250631.10 - phase: 0 
         (344 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024770001 assembled CDS                                       508   e-144
GSVIVT01032851001 assembled CDS                                       499   e-142
GSVIVT01016291001 assembled CDS                                       159   2e-39
GSVIVT01016290001 assembled CDS                                       155   3e-38
GSVIVT01008052001 assembled CDS                                        74   8e-14

>GSVIVT01024770001 assembled CDS
          Length = 589

 Score =  508 bits (1309), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/345 (76%), Positives = 293/345 (84%), Gaps = 20/345 (5%)

Query: 1   MDRYSSVEDAYADGIKRLAKLLARVQDVDPPRLSAGVVNLQTRHF-PSLKNSNMTSEEYK 59
           +D+YSSVE+A+ DG+ RL  L++RV D+ PP+L+AG + LQT  F PSL+ S MT +EY 
Sbjct: 264 LDQYSSVEEAFNDGMNRLEALVSRVHDIVPPKLAAGSIKLQTGLFGPSLEKSTMTCDEYM 323

Query: 60  GIVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVA 119
             VL+AKEHILAGDIFQIVLSQRFERRTFADPFEVYRALR+VNPSPYMTYLQARGCILVA
Sbjct: 324 KAVLEAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVA 383

Query: 120 SSPEILTRVKKNKIINRPLAGTIRRGKTTEEDKMLEVQLLNDPKQCAEHIMLVDLGRNDV 179
           SSPEILTRVKKN+IINRPLAGT+RRGKT +ED MLE QL ND KQCAEHIMLVDLGRNDV
Sbjct: 384 SSPEILTRVKKNRIINRPLAGTVRRGKTPKEDIMLENQLRNDEKQCAEHIMLVDLGRNDV 443

Query: 180 GKVSKYGSVTVEKLMNIERYSHVMHISSTVSGELRDGLSTWDALRAALPVGTVSGAPKVK 239
           GKVSK GSVTVEKLMNIERYSHVMHISSTV+GEL D L++WDALRAALPVGTVSGAPKVK
Sbjct: 444 GKVSKPGSVTVEKLMNIERYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVK 503

Query: 240 AMELIDQFEVHRRGPYSGGFGSVSFNGDMDVALALRTMVFPTGARNDTMYLYKGAEQRRE 299
           AMELIDQ EV RRGPYSGGFG +SF+GDMD+ALALRT+                   RRE
Sbjct: 504 AMELIDQLEVTRRGPYSGGFGGISFSGDMDIALALRTI-------------------RRE 544

Query: 300 WVSYLQAGAGIVADSDPNDEHRECQNKAAGLARAIDLAEASFINK 344
           WV++LQAGAGIVADS P DE REC+NKAA LARAIDLAE+SFI K
Sbjct: 545 WVAHLQAGAGIVADSVPADEQRECENKAAALARAIDLAESSFIEK 589


>GSVIVT01032851001 assembled CDS
          Length = 590

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/345 (70%), Positives = 283/345 (82%), Gaps = 5/345 (1%)

Query: 1   MDRYSSVEDAYADGIKRLAKLLARVQDVDPPRLSAGVVNLQTRHFPS-LKNSNMTSEEYK 59
           +D +SSVE AY DG+KRL  LL+RVQD+DPP+LS G V    + F S L  SNMTSE YK
Sbjct: 237 LDLHSSVEKAYVDGMKRLEILLSRVQDIDPPKLSPGCVESHIQSFSSSLNESNMTSEAYK 296

Query: 60  GIVLKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVA 119
               KAKEHI AGDIFQI LSQ FERRTFADPFEVYRA RVVNPSP+M YLQARGC+LVA
Sbjct: 297 ----KAKEHIRAGDIFQIGLSQCFERRTFADPFEVYRAFRVVNPSPFMAYLQARGCVLVA 352

Query: 120 SSPEILTRVKKNKIINRPLAGTIRRGKTTEEDKMLEVQLLNDPKQCAEHIMLVDLGRNDV 179
           SSPEILT VKKN I+NRPLAGT+RRG T  ED+MLE QLLND KQCAEHIMLVDLGRN+V
Sbjct: 353 SSPEILTHVKKNNIVNRPLAGTVRRGTTIHEDEMLEGQLLNDEKQCAEHIMLVDLGRNNV 412

Query: 180 GKVSKYGSVTVEKLMNIERYSHVMHISSTVSGELRDGLSTWDALRAALPVGTVSGAPKVK 239
           GKV+K+GS+ VE L  +E +SHVMHISSTV+GEL+D L++W+ALR+ L VG VSGAPKVK
Sbjct: 413 GKVAKFGSLKVEDLKAVECFSHVMHISSTVTGELQDHLTSWNALRSILHVGAVSGAPKVK 472

Query: 240 AMELIDQFEVHRRGPYSGGFGSVSFNGDMDVALALRTMVFPTGARNDTMYLYKGAEQRRE 299
           AMELID++E  RRGPY GGFG+VSF GDM++ L LRT+VFPTG R DT++ YK  + RRE
Sbjct: 473 AMELIDEWEESRRGPYGGGFGNVSFTGDMEIDLTLRTIVFPTGNRYDTLFSYKDTKLRRE 532

Query: 300 WVSYLQAGAGIVADSDPNDEHRECQNKAAGLARAIDLAEASFINK 344
           WV+Y QAGAGIVADS  +D+ R+C+ KAA LA AIDLAEA+F NK
Sbjct: 533 WVAYFQAGAGIVADSVVDDKQRDCEGKAAALACAIDLAEAAFYNK 577


>GSVIVT01016291001 assembled CDS
          Length = 853

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 149/271 (54%), Gaps = 22/271 (8%)

Query: 56  EEYKGIVLKAKEHILAGDIFQIVLSQRFERRTFA-DPFEVYRALRVVNPSPYMTYLQ--A 112
           E+Y   V K  + I  G+ +++ L+ +  +R    D   +Y  LR  NP+PY  +L    
Sbjct: 576 EQYMKDVEKCLKLIKDGESYELCLTTQMRKRIGQIDYLGLYLNLREKNPAPYAAWLNFSK 635

Query: 113 RGCILVASSPEILTRVKKNKIIN-RPLAGTIRRGKTTEEDKMLEVQLLNDPKQCAEHIML 171
               +  SSPE   ++  N I+  +P+ GTI RG T EED+ L++QL    K  AE++M+
Sbjct: 636 ENLCICCSSPERFLQLDGNGILEAKPIKGTIARGLTKEEDEHLKLQLQYSEKDQAENLMI 695

Query: 172 VDLGRNDVGKVSKYGSVTVEKLMNIERYSHVMHISSTVSGELRDGLSTWDALRAALPVGT 231
           VDL RND+G+V + GS+ V  LM++E Y+ V  + ST+ G+ +  +S  D +RAA P G+
Sbjct: 696 VDLLRNDLGRVCEPGSIHVPCLMDVESYATVHTMVSTIRGKKQSKMSPVDCVRAAFPGGS 755

Query: 232 VSGAPKVKAMELIDQFEVHRRGPYSGGFGSVSFNGDMDVALALRTMVFPTGARNDTMYLY 291
           ++GAPK+++MEL+D  E   RG YSG  G  S+N   D+ + +RT+V   G  +      
Sbjct: 756 MTGAPKLRSMELLDSIETSSRGIYSGSIGFFSYNQTFDLNIVIRTIVIHEGEAS------ 809

Query: 292 KGAEQRREWVSYLQAGAGIVADSDPNDEHRE 322
                       +  G  IVA S+P  E+ E
Sbjct: 810 ------------VGGGGAIVALSNPESEYEE 828


>GSVIVT01016290001 assembled CDS
          Length = 827

 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 151/272 (55%), Gaps = 24/272 (8%)

Query: 56  EEYKGIVLKAKEHILAGDIFQIVLSQRFERRTFA-DPFEVYRALRVVNPSPYMTYL---Q 111
           E+Y   V +  + I  G+ +++ L+ +  +R    D  + Y  LR  NP+P+  +L   +
Sbjct: 541 EQYMKDVKQCLQFIKDGESYELCLTSQLRKRIGEMDLLDFYLHLREKNPAPFAAWLNFPK 600

Query: 112 ARGCILVASSPEILTRVKKNKIIN-RPLAGTIRRGKTTEEDKMLEVQLLNDPKQCAEHIM 170
            + CI  +SSPE   ++ +N ++  +P+ GT+ RG   E D+ L+ +L    K  AE++M
Sbjct: 601 EKLCI-CSSSPERFLKLDENGMLEAKPIKGTVPRGSAKEADEQLKQKLQCSEKDQAENLM 659

Query: 171 LVDLGRNDVGKVSKYGSVTVEKLMNIERYSHVMHISSTVSGELRDGLSTWDALRAALPVG 230
           +VDL RN++G+V + GSV V  LM++E Y+ V  + ST+ G+    +S  D +RAA P G
Sbjct: 660 IVDLLRNNLGRVCEVGSVHVPLLMDVESYTTVHTMVSTIRGKKDSTMSPVDCVRAAFPGG 719

Query: 231 TVSGAPKVKAMELIDQFEVHRRGPYSGGFGSVSFNGDMDVALALRTMVFPTGARNDTMYL 290
           +++GAPK+++MEL+D  E   RG YSG  G  S+N   D+ + +RT+V   G  +     
Sbjct: 720 SMTGAPKLRSMELLDSIESSSRGIYSGSIGFFSYNQTFDLNIVIRTVVIHEGEAS----- 774

Query: 291 YKGAEQRREWVSYLQAGAGIVADSDPNDEHRE 322
                        + AG  I+A SDP  EH E
Sbjct: 775 -------------VGAGGAIIALSDPAGEHEE 793


>GSVIVT01008052001 assembled CDS
          Length = 511

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 28/300 (9%)

Query: 40  LQTRHFPSLKNSNMTSEEYKGIVLKAKEHILAGDIFQIVL--SQRFERRTFADPFEVYRA 97
           L   H PS  + N+       I+ +A   ++     ++VL  S R    +  DP      
Sbjct: 232 LSNSHVPSKASWNLAVNRALQIIGRADSPLI-----KVVLARSSRVVTTSHIDPIAWLAC 286

Query: 98  LRVVNPSPYMTYLQARGC-ILVASSPEILTRVKKNKIINRPLAGTIRRGKTTEEDKMLEV 156
           L+V   + Y  +LQ       + ++PE L   K+  I +  LAGT  RG +  +D  +E+
Sbjct: 287 LQVEGQNAYQFFLQPPDAPAFIGNTPEQLFHRKRLCIHSEALAGTRARGGSKAQDLQIEL 346

Query: 157 QLLNDPKQCAEHIMLVDLGRNDVGKVSKYGSVTVEKLMNIERYSHVMHISSTVSGELRDG 216
            LL+ PK+  E  ++ +  +  +  +    +V VE    I +   + H+ + +SG LR  
Sbjct: 347 DLLSSPKEDFEFSIVRESIQRKLEAICS--TVWVEPKKAIRKLPRIQHLYAQLSGRLRSE 404

Query: 217 LSTWDALRAALPVGTVSGAPKVKAMELIDQFEVHRRGPYSGGFGSVSFNGDMDVALALRT 276
              +D L +  P   V G P+ +A  LI + E+  RG ++G  G     G+ + A+ +R+
Sbjct: 405 DDEFDILSSLHPTPAVCGFPREEARLLIAETEMFDRGMFAGPVGWFG-GGETEFAVGIRS 463

Query: 277 MVFPTGARNDTMYLYKGAEQRREWVSYLQAGAGIVADSDPNDEHRECQNKAAGLARAIDL 336
            +   G                     + AG GIV  S+ + E  E + K +   + I +
Sbjct: 464 ALVEKGLGG-----------------LIYAGTGIVRGSNSSLEWEELELKISQFTKPIKV 506