Jatropha Genome Database
- JcCB0250281.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0250281.10 + phase: 0 /pseudo/partial
(198 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01020263001 assembled CDS 121 2e-28
GSVIVT01013617001 assembled CDS 108 1e-24
GSVIVT01032503001 assembled CDS 99 1e-21
GSVIVT01032959001 assembled CDS 97 3e-21
GSVIVT01020217001 assembled CDS 82 1e-16
GSVIVT01019445001 assembled CDS 78 3e-15
GSVIVT01020219001 assembled CDS 73 7e-14
GSVIVT01032701001 assembled CDS 69 1e-12
GSVIVT01038736001 assembled CDS 65 2e-11
GSVIVT01011951001 assembled CDS 62 2e-10
GSVIVT01008480001 assembled CDS 58 2e-09
GSVIVT01012114001 assembled CDS 56 9e-09
GSVIVT01010951001 assembled CDS 53 7e-08
GSVIVT01010950001 assembled CDS 47 5e-06
>GSVIVT01020263001 assembled CDS
Length = 679
Score = 121 bits (304), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 74 MRDCHELETQLIENFSGFLKWERHSKEMAIAEPVENNSRPSG----------RRVSFQLT 123
+RD ++ ET+LIE + FL+ S+E+A+ E + +G R+V FQ
Sbjct: 550 VRDSYDFETKLIEKVAAFLQ----SEELAVTEQPMEKAVATGNGAGVGSGKRRKVQFQCV 605
Query: 124 WEANKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLG 183
E N+EV ELMEA+E+GV+YM+ N S+ A+E SS +KKF I++VY FLRRN R PA +LG
Sbjct: 606 -ELNEEVKELMEARESGVAYMIGNPSIIANEVSSPVKKFVINVVYGFLRRNCRLPAIALG 664
Query: 184 LPHASLIQVGMVYRV 198
+PH SL++VGMVY V
Sbjct: 665 IPHTSLVEVGMVYHV 679
>GSVIVT01013617001 assembled CDS
Length = 708
Score = 108 bits (271), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 127 NKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLPH 186
NKEV EL A+EAG++YMM N V ASE SS+LKKF IDIVY FLR+N R PATSLG+PH
Sbjct: 637 NKEVEELEAAREAGLAYMMGNTCVMASETSSYLKKFVIDIVYGFLRQNCRRPATSLGVPH 696
Query: 187 ASLIQVGMVYRV 198
SLI+VGMVYRV
Sbjct: 697 TSLIEVGMVYRV 708
>GSVIVT01032503001 assembled CDS
Length = 735
Score = 99.0 bits (245), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
Query: 75 RDCH----ELETQLIENFSGFLKWERHSKEMAIAEPVENNSRPSGRRVSF------QLTW 124
RD H E E L+ + + F++ E + + + + RP +RV F Q+
Sbjct: 603 RDVHKDDVEFEKDLVCSIAEFIRSEGPEYDTPLLREIRSPERPR-KRVRFVLPDSPQIDR 661
Query: 125 EANKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGL 184
A +E+ ELMEA+EAG+++++ + VRA SS +K+ IDI YDFLRRNSR P +L +
Sbjct: 662 AAREELHELMEAREAGMAFILGHAYVRAKRGSSLIKRIVIDIGYDFLRRNSRGPNYALSI 721
Query: 185 PHASLIQVGMVYRV 198
PHAS ++VGM+Y V
Sbjct: 722 PHASTLEVGMIYHV 735
>GSVIVT01032959001 assembled CDS
Length = 696
Score = 97.4 bits (241), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 9/130 (6%)
Query: 75 RDCHELETQLIENFSGFLKWERHSKEMAIAEPVENNSRPSGRRVSFQL------TWEANK 128
RD + E L+++ + F++ E + + +E R RRV FQL +
Sbjct: 570 RDDGDFENLLVQSIAEFIQMEAEEPQFSTSEKGLGIRR---RRVRFQLPPNPGMDASVRE 626
Query: 129 EVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLPHAS 188
E+ +L++AKEAGV+Y+M + V+A +SSFLKK ID+ Y FLR+N R PA +L +PH S
Sbjct: 627 ELIDLIQAKEAGVAYIMGHSYVKARRSSSFLKKLVIDMGYSFLRKNCRGPAVALNIPHIS 686
Query: 189 LIQVGMVYRV 198
LI+VGM+Y V
Sbjct: 687 LIEVGMIYYV 696
>GSVIVT01020217001 assembled CDS
Length = 725
Score = 82.0 bits (201), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 126 ANKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLP 185
A +E+ ELMEA+EAG++Y++ + V+A SS +KK I+ YDFLRRNSR P+ +L +P
Sbjct: 653 AREELQELMEAREAGIAYILGHSYVKAKPGSSMVKKLVINYGYDFLRRNSRGPSYALCVP 712
Query: 186 HASLIQVGMVYRV 198
HAS ++VGM Y V
Sbjct: 713 HASTLEVGMNYLV 725
>GSVIVT01019445001 assembled CDS
Length = 799
Score = 77.8 bits (190), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
Query: 116 RRVSFQLTWEANK------EVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYD 169
R V +QL + K E+ EL+EAK A V+Y++ + ++A SSFLKK A+D+ Y
Sbjct: 711 RHVRYQLLDKNYKHPHVKEELLELVEAKHAEVAYVIGHSYIKARRNSSFLKKLAVDVAYS 770
Query: 170 FLRRNSRCPATSLGLPHASLIQVGMVYRV 198
FLRRN R P +L +PH SLI GM Y V
Sbjct: 771 FLRRNCRSPGVALHIPHISLIMAGMNYYV 799
>GSVIVT01020219001 assembled CDS
Length = 731
Score = 73.2 bits (178), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 76 DCHELETQLIENFSGFLKWERHSKEMAIAEPVEN------NSRPSGRRVSFQLTWEANK- 128
D H E L+E+ FL+ R S+++A+ + + R R + L + +
Sbjct: 601 DHHSFEQLLVESLEKFLR--RESQDLALESNLNELDFDSVSVRSRDRETTSGLPSDEDPS 658
Query: 129 ---EVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLP 185
E+ L EA +G +Y++ + VRA + S F+KK AI+ Y FLRRN R +L +P
Sbjct: 659 LEYELSALKEAMNSGFTYLLGHGDVRAKKNSWFIKKLAINYFYAFLRRNCRAGTANLRVP 718
Query: 186 HASLIQVGMVYRV 198
H +++QVGM Y V
Sbjct: 719 HMNIMQVGMTYMV 731
>GSVIVT01032701001 assembled CDS
Length = 766
Score = 68.9 bits (167), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 52/74 (70%)
Query: 125 EANKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGL 184
+ +E+ EL A+++G ++++ + VRA + SS +++ AI++ Y+FLRRN R P +L +
Sbjct: 693 QLQEELEELWAAQQSGTAFILGHSHVRAKQGSSLVRRLAINVGYNFLRRNCRGPDVALKV 752
Query: 185 PHASLIQVGMVYRV 198
P SL++VGMVY V
Sbjct: 753 PPVSLLEVGMVYIV 766
>GSVIVT01038736001 assembled CDS
Length = 614
Score = 65.5 bits (158), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 128 KEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLPHA 187
+E+ + +AKE+GV Y++ + +RA + S F+KK I+ Y FLR+N R +L +PH+
Sbjct: 544 RELSFIRKAKESGVVYLLGHGDIRAKKNSWFIKKLMINYFYAFLRKNCRRGIANLSVPHS 603
Query: 188 SLIQVGMVYRV 198
L+QVGM Y V
Sbjct: 604 HLMQVGMTYMV 614
>GSVIVT01011951001 assembled CDS
Length = 748
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 79 ELETQLIENFSGFLKWERHSKEMAIAEPVENNSRPSGRRVSFQLTWEANKEVGELMEAKE 138
E E QL+EN F++ E + E A AE ++ N P ++ + A+E
Sbjct: 646 EFERQLVENLKEFIRHEGYISE-ARAEVLQQN--PPRMQI--------------VQTAQE 688
Query: 139 AGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLPHASLIQVGMVYRV 198
GV Y++ V A E SS K+ ++ Y FLR+N R L +P L++VGM Y +
Sbjct: 689 KGVVYLLGEAEVVAEEKSSLFKQIVVNYAYSFLRKNCRQGEKVLEIPRTRLLRVGMTYEI 748
>GSVIVT01008480001 assembled CDS
Length = 798
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 116 RRVSFQLTWEANK-------EVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVY 168
R+V F L E+ + E+ EL++A+E+G +Y + ++ + SSFLK+F I + Y
Sbjct: 705 RKVRFMLPPESPRMQVSVRAELRELVDARESGTAYFLGQSHLKVRDGSSFLKRFLI-MTY 763
Query: 169 DFLRRNSRCPATSLGLPHASLIQV 192
FL +N R P +L +PHA+L++V
Sbjct: 764 VFLDKNCREPPVALNIPHAALVEV 787
>GSVIVT01012114001 assembled CDS
Length = 743
Score = 56.2 bits (134), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 119 SFQLTWEANKEVGELME----AKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRN 174
+ LT + +G+ +E + AGV +++ N VRA S F KK A+D +Y FLR+
Sbjct: 660 NLDLTISSVDSIGDELEFMNNCRSAGVVHILGNTVVRARRDSRFYKKIAVDYIYAFLRKI 719
Query: 175 SRCPATSLGLPHASLIQVGMVYRV 198
R + +PH SL+ VG ++ V
Sbjct: 720 CRENSVIFNVPHESLLNVGQIFYV 743
>GSVIVT01010951001 assembled CDS
Length = 751
Score = 53.1 bits (126), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 80 LETQLIENFSGFLKWERHSKEMAIAEPVENNSRPSGRRVSFQLTWEANKEVGELMEAKEA 139
E L+E F+ R M N SG R + +K++ + A +A
Sbjct: 641 FERLLVERLKEFI---REDMMMTPTLTHSNEDMVSGERQE-----DVDKDIEAIDRATQA 692
Query: 140 GVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGLPHASLIQVGMVYRV 198
GV +++ I V A + S KK I++ Y+ L++N R + +PH +++VGM+Y +
Sbjct: 693 GVVHLIGEIEVMAKKGSKLGKKVLINVGYNILKKNLRQKEKTFDIPHKRMLKVGMIYEL 751
>GSVIVT01010950001 assembled CDS
Length = 734
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 125 EANKEVGELMEAKEAGVSYMMSNISVRASEASSFLKKFAIDIVYDFLRRNSRCPATSLGL 184
+ K++ + A + GV +++ V A + S F K+ I++ Y+ L++N R +
Sbjct: 661 DVKKDIEVIDSAAQVGVVHLIGETEVMADKGSRFGKRVLINVGYNILKKNLRQTEKVFDI 720
Query: 185 PHASLIQVGMVYRV 198
PH +++VGM+Y +
Sbjct: 721 PHKRILKVGMIYEL 734