Jatropha Genome Database

JcCB0249501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249501.20 + phase: 0 /pseudo/partial
         (67 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009900001 assembled CDS                                        73   3e-14
GSVIVT01018785001 assembled CDS                                        73   3e-14

>GSVIVT01009900001 assembled CDS
          Length = 188

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 37/38 (97%)

Query: 2  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
          IRFI+LQNRQGKTRLAKYYVPLE+SEKHKVEYEV+ LV
Sbjct: 48 IRFIILQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLV 85


>GSVIVT01018785001 assembled CDS
          Length = 172

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 36/38 (94%)

Query: 2  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVYNLV 39
          IRFILLQNRQGKTRLAKYYVP E+SEKHKVEYEV+ LV
Sbjct: 32 IRFILLQNRQGKTRLAKYYVPFEESEKHKVEYEVHRLV 69