Jatropha Genome Database

JcCB0249501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249501.10 + phase: 2 /partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009899001 assembled CDS                                       235   4e-63
GSVIVT01015297001 assembled CDS                                       142   4e-35
GSVIVT01016971001 assembled CDS                                       129   5e-31
GSVIVT01006129001 assembled CDS                                       127   2e-30
GSVIVT01002667001 assembled CDS                                       125   6e-30
GSVIVT01031551001 assembled CDS                                        99   5e-22

>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  235 bits (600), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 126/135 (93%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLGAESSSSARKIVVEVCDTIVKRGGRLAGAGIVGI 60
           TPD+CAMQQDNSD L +VG+IL +V G +S  S RK+VVEVCDTIVKRGGRLAGAGIVGI
Sbjct: 277 TPDICAMQQDNSDHLDAVGAILYDVAGVKSDLSVRKMVVEVCDTIVKRGGRLAGAGIVGI 336

Query: 61  LQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEISKNIVIEHSKDG 120
           LQKMEEDSK LIFGKRTVVAMDGGLYE+YPQYRRYL+EAVTE+LGLE+SKN+VIEHSKDG
Sbjct: 337 LQKMEEDSKDLIFGKRTVVAMDGGLYENYPQYRRYLKEAVTELLGLEMSKNVVIEHSKDG 396

Query: 121 SGIGAALLAATNSKY 135
           SGIGAALLAA+NSKY
Sbjct: 397 SGIGAALLAASNSKY 411


>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 99/136 (72%), Gaps = 1/136 (0%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLGAESSS-SARKIVVEVCDTIVKRGGRLAGAGIVG 59
           TPD+ AM  D S DL+ VGS L ++L   ++S   RK+V+E+CD +  RG RL+ AGI+G
Sbjct: 296 TPDMSAMHHDTSPDLRVVGSKLKDILDIPNTSLKTRKVVIELCDIVATRGARLSAAGILG 355

Query: 60  ILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEISKNIVIEHSKD 119
           IL+K+  D+      + +V+A+DGGLYEHY ++R  L+  + E+LG E+S NIVI+HS D
Sbjct: 356 ILKKLGRDTMKEGDKQNSVIALDGGLYEHYTEFRTCLESTLKELLGAEVSDNIVIKHSND 415

Query: 120 GSGIGAALLAATNSKY 135
           GSGIGAALLAA++S+Y
Sbjct: 416 GSGIGAALLAASHSQY 431


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 97/136 (71%), Gaps = 1/136 (0%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLG-AESSSSARKIVVEVCDTIVKRGGRLAGAGIVG 59
           TPD+ +M  D S +L+ VG  +  +LG +++    RKIVV++C+ +  RG RLA A I G
Sbjct: 296 TPDMSSMHHDTSVNLKVVGIKMKEILGISDTPLKMRKIVVQLCNIVATRGARLAAAAIFG 355

Query: 60  ILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEISKNIVIEHSKD 119
           +L+KM  D+      ++TV+AMDGGL+EHY +Y + L+  + E++G ++S+++ IEH+ D
Sbjct: 356 VLKKMGRDTVRPGEKQKTVIAMDGGLFEHYSEYSKCLENTLRELVGEQVSESLFIEHAND 415

Query: 120 GSGIGAALLAATNSKY 135
           GSGIGAALLAA++S+Y
Sbjct: 416 GSGIGAALLAASHSQY 431


>GSVIVT01006129001 assembled CDS
          Length = 202

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 6/134 (4%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLGAESSSS-ARKIVVEVCDTIVKRGGRLAGAGIVG 59
           +PD+ AM QD S+D + V   L  +    +S+  AR++V EVCD + +RG RLAGAGIVG
Sbjct: 69  SPDMAAMHQDTSEDHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGARLAGAGIVG 128

Query: 60  ILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEISKNIVIEHSKD 119
           I +K+     G I  KR+ + ++GGLYEHY  +R Y+  +V E+LG E+S N+VIEHS  
Sbjct: 129 ITKKL-----GRIENKRSAITVEGGLYEHYRVFRNYMHSSVWEMLGNELSDNVVIEHSHG 183

Query: 120 GSGIGAALLAATNS 133
           GSG GA  LAA+ +
Sbjct: 184 GSGAGAIFLAASQT 197


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score =  125 bits (314), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 89/134 (66%), Gaps = 6/134 (4%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLGAESSSS-ARKIVVEVCDTIVKRGGRLAGAGIVG 59
           +PD+ AM QD S+D + V   L  +    +S+  AR++V EVCD + +RG RLAGAGIVG
Sbjct: 346 SPDMAAMHQDTSEDHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGARLAGAGIVG 405

Query: 60  ILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEISKNIVIEHSKD 119
           I +K+     G I  KR+ V ++GGLYEHY  +R Y+  +V E+LG E+S N+VIEHS  
Sbjct: 406 ITKKL-----GRIENKRSAVTVEGGLYEHYRVFRNYMHSSVWEMLGNELSDNVVIEHSHG 460

Query: 120 GSGIGAALLAATNS 133
           GSG GA  LAA+ +
Sbjct: 461 GSGAGAIFLAASQT 474


>GSVIVT01031551001 assembled CDS
          Length = 523

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 11/141 (7%)

Query: 1   TPDLCAMQQDNSDDLQSVGSILCNVLG-AESSSSARKIVVEVCDTIVKRGGRLAGAGIVG 59
           TP +  M  D S +L  V  IL   L   +     RK+VV+VCD + +R  RLA AGIVG
Sbjct: 356 TPSMADMHADESPELMEVARILKEDLQIPDVPLKVRKLVVKVCDVVTRRAARLAAAGIVG 415

Query: 60  ILQKMEEDSKGLIFG----------KRTVVAMDGGLYEHYPQYRRYLQEAVTEILGLEIS 109
           IL+K+  D  G +            +RTVVAMDG LY  Y  ++ YL EA+ EILG E++
Sbjct: 416 ILKKIGRDGSGGVASGRSRGSDGKMRRTVVAMDGSLYTRYTMFKEYLHEALCEILGEEVA 475

Query: 110 KNIVIEHSKDGSGIGAALLAA 130
           + ++++ ++DGSGIGAALLAA
Sbjct: 476 QYVILKVTEDGSGIGAALLAA 496