Jatropha Genome Database

JcCB0249431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249431.10 + phase: 0 /partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031462001 assembled CDS                                       239   7e-64
GSVIVT01033413001 assembled CDS                                       147   3e-36
GSVIVT01021959001 assembled CDS                                       145   9e-36
GSVIVT01021949001 assembled CDS                                       134   3e-32
GSVIVT01021922001 assembled CDS                                       123   6e-29
GSVIVT01023414001 assembled CDS                                        89   2e-18
GSVIVT01019902001 assembled CDS                                        60   8e-10
GSVIVT01021953001 assembled CDS                                        50   8e-07

>GSVIVT01031462001 assembled CDS
          Length = 212

 Score =  239 bits (609), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 144/194 (74%), Gaps = 7/194 (3%)

Query: 1   MAAHTILAASPSSHPLLYPFPNXXXXXXXXXXXXFHGVSLKLPRQSLPLSXXXXXXXXXX 60
           MA +T+L+ +PS   +   FPN            FHG+SLKL RQS+PL+          
Sbjct: 1   MAVNTLLSTAPSR--VFLSFPNPSPNPSPQLHSQFHGLSLKLTRQSIPLATAPKPLSVVA 58

Query: 61  XXXXXXXXXXXXXXXGTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTN 120
                          GTS+VEGVVTL+QEDDGPTTV+VR+TGLTPG HGFHLHE+GDTTN
Sbjct: 59  VTKKAVAVLK-----GTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTN 113

Query: 121 GCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGR 180
           GC+STGAHFNPN  THGAPED++RHAGDLGNIVANA+GVAEATIVD QIPLSGPNAV+GR
Sbjct: 114 GCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIVANAEGVAEATIVDTQIPLSGPNAVIGR 173

Query: 181 ALVVHELEDDLGKG 194
           ALVVHELEDDLGKG
Sbjct: 174 ALVVHELEDDLGKG 187


>GSVIVT01033413001 assembled CDS
          Length = 156

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 88/119 (73%)

Query: 76  GTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKT 135
           G +NV G +   Q+  G T V  R+TGLTPG HGFH+H  GDTTNGC+STG HFNP  K 
Sbjct: 12  GNANVRGSLHFIQDPAGSTHVKGRITGLTPGLHGFHIHALGDTTNGCMSTGPHFNPLKKD 71

Query: 136 HGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           HGAP D+ RHAGDLGNIVA  DGVAE +I D QI LSG ++++GRA+VVH   DDLG+G
Sbjct: 72  HGAPTDKERHAGDLGNIVAGPDGVAEVSIKDMQISLSGQHSILGRAVVVHADPDDLGRG 130


>GSVIVT01021959001 assembled CDS
          Length = 152

 Score =  145 bits (367), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 82/113 (72%)

Query: 82  GVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTHGAPED 141
           G +   +E DG TTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP  K HGAPED
Sbjct: 16  GTIYFAEEGDGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED 75

Query: 142 EIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           E RHAGDLGN++   DG     IVD QIPL+G N++VGRA+VVH   DDLGKG
Sbjct: 76  ENRHAGDLGNVIVGEDGTVNFKIVDKQIPLTGSNSIVGRAVVVHADPDDLGKG 128


>GSVIVT01021949001 assembled CDS
          Length = 148

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 80/115 (69%), Gaps = 4/115 (3%)

Query: 80  VEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTHGAP 139
           V G +   +E DG TTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP  K HGAP
Sbjct: 14  VCGTIYFAEEGDGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP 73

Query: 140 EDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           EDE RHAGDLGN++   DG     I    IPL+G N++VGRA+VVH   DDLGKG
Sbjct: 74  EDENRHAGDLGNVIVGEDGTVNFKI----IPLTGSNSIVGRAVVVHADPDDLGKG 124


>GSVIVT01021922001 assembled CDS
          Length = 861

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 66/90 (73%)

Query: 91  DGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTHGAPEDEIRHAGDLG 150
           DG TTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP  K HGAPEDE RHAGDLG
Sbjct: 34  DGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAGDLG 93

Query: 151 NIVANADGVAEATIVDNQIPLSGPNAVVGR 180
           N++   DG     IVD QIPL+G N++V R
Sbjct: 94  NVIVGEDGTVNFKIVDKQIPLTGSNSIVER 123


>GSVIVT01023414001 assembled CDS
          Length = 79

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 52/78 (66%)

Query: 119 TNGCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVV 178
           TNGC+ST  +FNP+ K HGA ED+  H GDLGN++   DG     IVD QIP +G N++V
Sbjct: 2   TNGCMSTRPYFNPSRKDHGALEDKNSHVGDLGNVIVGEDGTINFKIVDKQIPFTGSNSIV 61

Query: 179 GRALVVHELEDDLGKGNF 196
            R +VVH   DDLGKG  
Sbjct: 62  ERVVVVHIDPDDLGKGKL 79


>GSVIVT01019902001 assembled CDS
          Length = 253

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 79  NVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTHGA 138
           ++ GVV L Q +     +    +GL+ G HG+ ++E+GD T G  STG  FNP NK  G 
Sbjct: 106 DIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRGAASTGKVFNPTNK--GT 163

Query: 139 PEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELED 189
            E+ +   GDLG +  + +G A    V   + +     ++GRA+VV+  ED
Sbjct: 164 DEEPL---GDLGTLDVDENGEAFFLGVKQNLRVG---VLIGRAVVVYGTED 208


>GSVIVT01021953001 assembled CDS
          Length = 80

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%)

Query: 121 GCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQI 169
            C     +FNP+ K HGA EDE  H GDLGN++   +G     IVD QI
Sbjct: 15  ACQPILPYFNPSGKVHGALEDENHHTGDLGNVIIGENGTINFKIVDKQI 63