Jatropha Genome Database

JcCB0247731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0247731.10 + phase: 0 /partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025612001 assembled CDS                                       349   3e-97

>GSVIVT01025612001 assembled CDS
          Length = 307

 Score =  349 bits (896), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 178/187 (95%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           VDNRDS+EP++TPEQAVKLCDRNFGIGADGVIFAMPG NGTDY+MRIFNSDGSEPEMCGN
Sbjct: 38  VDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGINGTDYTMRIFNSDGSEPEMCGN 97

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
           GVRCFARFIAELENL GKQSFT+HTGAGLIVPEIQ+DGKVKVDMG+PILKA DVPT+LPA
Sbjct: 98  GVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKVKVDMGKPILKALDVPTKLPA 157

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NKD +VVKSELNVDG +WNVTCVSMGNPHCVTFGTK  ++L VD LNLA+IGPKFEHHA+
Sbjct: 158 NKDQSVVKSELNVDGVSWNVTCVSMGNPHCVTFGTKGGQNLQVDELNLADIGPKFEHHAM 217

Query: 181 FPARTNT 187
           FPARTNT
Sbjct: 218 FPARTNT 224