Jatropha Genome Database

JcCB0246261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0246261.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035168001 assembled CDS                                       122   2e-29
GSVIVT01009087001 assembled CDS                                        81   1e-16

>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  122 bits (307), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/58 (91%), Positives = 55/58 (94%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPEL 58
           LIAEAWDAGGLYQVG FPHW +WSEWNGKYRDIVRQFIKG+DGFSGAFAECLCGSP L
Sbjct: 487 LIAEAWDAGGLYQVGMFPHWGLWSEWNGKYRDIVRQFIKGSDGFSGAFAECLCGSPNL 544


>GSVIVT01009087001 assembled CDS
          Length = 775

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPEL 58
           +IAE WD GGLY VG FP+W  W+EWNGKYRD +R+FIKG  G  G FA  + GS +L
Sbjct: 473 IIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDLRRFIKGDPGTKGNFATRVAGSSDL 530