Jatropha Genome Database

JcCB0245051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0245051.10 - phase: 0 /partial
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011700001 assembled CDS                                       132   4e-32
GSVIVT01018452001 assembled CDS                                        82   6e-17

>GSVIVT01011700001 assembled CDS
          Length = 583

 Score =  132 bits (331), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 68/73 (93%)

Query: 1  MVVFKVSRVETTPFDGQKPGTSGLRKKVKVFVQPNYLHNFVQATFNALTAEKVRGATLVV 60
          MV+FKVSRV T+PFDGQKPGTSGLRKKVKVF Q NYLHNFVQ+TFNAL+ +K+RG TLVV
Sbjct: 1  MVMFKVSRVTTSPFDGQKPGTSGLRKKVKVFKQQNYLHNFVQSTFNALSQDKIRGMTLVV 60

Query: 61 SGDGRYFSKDAIQ 73
          SGDGRYFSKDAIQ
Sbjct: 61 SGDGRYFSKDAIQ 73


>GSVIVT01018452001 assembled CDS
          Length = 614

 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 49/66 (74%)

Query: 5   KVSRVETTPFDGQKPGTSGLRKKVKVFVQPNYLHNFVQATFNALTAEKVRGATLVVSGDG 64
           K+  + T P +GQK GTSGLRKKVKVF++ NYL N++QA FN+L  E  +   LV+ GDG
Sbjct: 59  KIISMPTKPIEGQKTGTSGLRKKVKVFIEENYLANWIQALFNSLPPEDYKDGVLVLGGDG 118

Query: 65  RYFSKD 70
           RYF+++
Sbjct: 119 RYFNRE 124