Jatropha Genome Database

JcCB0244361.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0244361.30 + phase: 2 /pseudo/partial
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010807001 assembled CDS                                       169   2e-43
GSVIVT01037538001 assembled CDS                                       108   6e-25
GSVIVT01033611001 assembled CDS                                       101   6e-23
GSVIVT01033612001 assembled CDS                                        98   6e-22
GSVIVT01034422001 assembled CDS                                        97   2e-21
GSVIVT01008192001 assembled CDS                                        96   3e-21
GSVIVT01026127001 assembled CDS                                        89   3e-19
GSVIVT01026131001 assembled CDS                                        89   4e-19
GSVIVT01034451001 assembled CDS                                        89   4e-19
GSVIVT01026129001 assembled CDS                                        89   4e-19
GSVIVT01007473001 assembled CDS                                        89   4e-19
GSVIVT01034669001 assembled CDS                                        89   5e-19
GSVIVT01034671001 assembled CDS                                        89   5e-19
GSVIVT01007474001 assembled CDS                                        87   2e-18
GSVIVT01026130001 assembled CDS                                        85   6e-18
GSVIVT01008191001 assembled CDS                                        84   1e-17
GSVIVT01008193001 assembled CDS                                        70   2e-13

>GSVIVT01010807001 assembled CDS
          Length = 365

 Score =  169 bits (429), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 88/95 (92%)

Query: 1   SEKLCSRGVDSTTSKQWKYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPL 60
           SEKLC++G+DSTTSKQWK E+ CGRPLGLRF K+TG+LYIADAYYGL+VVGPEGGLA PL
Sbjct: 68  SEKLCAKGIDSTTSKQWKVEQRCGRPLGLRFHKETGDLYIADAYYGLLVVGPEGGLATPL 127

Query: 61  ATHAGGKPILFANDLDLHENGSIFFTDTSKRYDRV 95
            TH  GKPILFANDLD+H+NGSIFFTDTSKRY+R+
Sbjct: 128 VTHVQGKPILFANDLDIHKNGSIFFTDTSKRYNRM 162


>GSVIVT01037538001 assembled CDS
          Length = 328

 Score =  108 bits (269), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 18  KYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDL 77
           K E +CGRPLGLRF+K+TG+LYIAD+Y GLM VGPEGGLA  L T A G P+ F NDLD+
Sbjct: 85  KNEHICGRPLGLRFNKRTGDLYIADSYLGLMKVGPEGGLATSLVTEADGVPLRFTNDLDI 144

Query: 78  HENGSIFFTDTSKRYDR 94
            + G+I+FTD+S +Y R
Sbjct: 145 DDAGNIYFTDSSSKYQR 161


>GSVIVT01033611001 assembled CDS
          Length = 272

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 1/78 (1%)

Query: 18  KYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDL 77
           + E +CGRPLGLRFDKKTG+LYIADAY+GL VV P GGLA PL T   G+ +LF ND+D+
Sbjct: 104 EMEHICGRPLGLRFDKKTGDLYIADAYFGLQVVEPNGGLATPLVTEVEGRRLLFTNDMDI 163

Query: 78  HE-NGSIFFTDTSKRYDR 94
            E    I+FTDTS  + R
Sbjct: 164 DEVEDVIYFTDTSTDFHR 181


>GSVIVT01033612001 assembled CDS
          Length = 365

 Score = 98.2 bits (243), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E +CGRPLGL F + TG LYIADAY GL+VVGP GGLA  +A+ A G P  F+N +D+H+
Sbjct: 112 EHICGRPLGLSFSELTGELYIADAYMGLLVVGPNGGLASTVASEAQGTPFGFSNGVDIHQ 171

Query: 80  -NGSIFFTDTSKRYDR 94
            NG+++F+D+S RY R
Sbjct: 172 TNGAVYFSDSSSRYQR 187


>GSVIVT01034422001 assembled CDS
          Length = 340

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 7/95 (7%)

Query: 1   SEKLCSRGVDSTTSKQWKYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPL 60
           + +LC  G+  T++     E VCGRPLGL+F++ T +LYIADAY+GL+VVG +GGLA  L
Sbjct: 90  TSRLCD-GLSDTSA-----EHVCGRPLGLKFNQATCDLYIADAYFGLLVVGRKGGLARQL 143

Query: 61  ATHAGGKPILFANDLDL-HENGSIFFTDTSKRYDR 94
           AT A G P LFAN +D+  + G+++FTDTS R+ R
Sbjct: 144 ATSAEGIPFLFANAVDIDQKTGTVYFTDTSTRFRR 178


>GSVIVT01008192001 assembled CDS
          Length = 1075

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 7/95 (7%)

Query: 1   SEKLCSRGVDSTTSKQWKYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPL 60
           S++LC    D         E  CGRPLG+ F+ KTG+LYIADAYYGL VVGP+GG A  L
Sbjct: 84  SKQLCDGSSDPAK------EPTCGRPLGIGFNNKTGDLYIADAYYGLFVVGPDGGRATQL 137

Query: 61  ATHAGGKPILFANDLDL-HENGSIFFTDTSKRYDR 94
           AT A G P  F N +D+  E G ++FTD S R+ R
Sbjct: 138 ATEAEGVPFRFLNAVDVDQETGIVYFTDASARFQR 172



 Score = 82.0 bits (201), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 7/93 (7%)

Query: 1   SEKLCSRGVDSTTSKQWKYERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPL 60
           +E++C   +D         E  CGRPLGL F+  TG+LY+ DAY GLMVVG  GG+A  L
Sbjct: 502 TEEMCDGSIDPA------LEATCGRPLGLGFNYHTGDLYMVDAYLGLMVVGSSGGIATQL 555

Query: 61  ATHAGGKPILFANDLDLHE-NGSIFFTDTSKRY 92
           A  A G P  F   LD+ + NG ++FT+ S R+
Sbjct: 556 AAAAEGIPFRFLAGLDVDQGNGMVYFTEASTRF 588



 Score = 68.9 bits (167), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 23  CGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE-NG 81
           CGRPLGL F+     +YIADAY GL V G  G LA  LAT A G P  F N LD+   +G
Sbjct: 843 CGRPLGLSFNNLRNQMYIADAYSGLFVAGTNGRLATKLATSAEGVPFCFLNGLDVDPLSG 902

Query: 82  SIFFTDTS 89
            ++FTD S
Sbjct: 903 LVYFTDFS 910


>GSVIVT01026127001 assembled CDS
          Length = 315

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 88  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGQNGGVAKQVAISAEGVPFRFTNALDIDQ 147

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 148 NTGVVYFTDTSTIFQR 163


>GSVIVT01026131001 assembled CDS
          Length = 343

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A +A G P  F N LD+ +
Sbjct: 116 EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGRNGGVAKQVAINAEGVPFRFTNALDIDQ 175

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 176 NTGVVYFTDTSTIFQR 191


>GSVIVT01034451001 assembled CDS
          Length = 653

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 95  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGQNGGVAKQVAISAEGVPFRFTNALDIDQ 154

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 155 NTGVVYFTDTSTIFQR 170



 Score = 84.3 bits (207), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++   +LYIA+AY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 426 EQVCGRPLGLKFNEAKCDLYIANAYFGLLVVGRNGGVAKQVAISAEGVPFRFTNALDIDQ 485

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 486 NTGVVYFTDTSTIFQR 501


>GSVIVT01026129001 assembled CDS
          Length = 322

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 95  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGQNGGVAKQVAISAEGVPFRFTNALDIDQ 154

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 155 NTGVVYFTDTSTIFQR 170


>GSVIVT01007473001 assembled CDS
          Length = 312

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 95  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGQNGGVAKQVAISAEGVPFRFTNALDIDQ 154

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 155 NTGVVYFTDTSTIFQR 170


>GSVIVT01034669001 assembled CDS
          Length = 291

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 112 EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGHNGGVAKQIAISAEGVPFRFTNALDIDQ 171

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 172 NTGIVYFTDTSTIFQR 187


>GSVIVT01034671001 assembled CDS
          Length = 322

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A  A G P  F N LD+ +
Sbjct: 95  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGHNGGVAKQIAISAEGVPFRFTNALDIDQ 154

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 155 NTGIVYFTDTSTIFQR 170


>GSVIVT01007474001 assembled CDS
          Length = 334

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VVG  GG+A  +A    G P  F N LD+ +
Sbjct: 107 EQVCGRPLGLKFNEATCDLYIADAYFGLLVVGRNGGVAKQVAISVEGVPFRFTNALDIDQ 166

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 167 NTGVVYFTDTSTIFQR 182


>GSVIVT01026130001 assembled CDS
          Length = 273

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 20  ERVCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE 79
           E+VCGRPLGL+F++ T +LYIADAY+GL+VV   GG+A  +A  A G P  F N LD+ +
Sbjct: 95  EQVCGRPLGLKFNEATCDLYIADAYFGLLVVRRNGGVAKQVAISAEGVPFRFTNALDIDQ 154

Query: 80  N-GSIFFTDTSKRYDR 94
           N G ++FTDTS  + R
Sbjct: 155 NTGVVYFTDTSTIFQR 170


>GSVIVT01008191001 assembled CDS
          Length = 693

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 23  CGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE-NG 81
           CGRPLG+ F+  TG LYIADAY GL+VVG  GGLA P+AT A G P  F N LD+ +  G
Sbjct: 106 CGRPLGVGFNNLTGQLYIADAYSGLLVVGSNGGLATPVATTAEGVPFRFLNGLDVDQLTG 165

Query: 82  SIFFTDTSKRYD 93
           +++FTD S  Y+
Sbjct: 166 NVYFTDASSVYE 177



 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 23  CGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLH-ENG 81
           CGRP GL F  +TG+LYIADAYYGLMVVGP GG+A  LA  A G P  F N LD+  E G
Sbjct: 454 CGRPFGLGFHYQTGDLYIADAYYGLMVVGPNGGVATQLANAADGVPFGFTNALDVDTETG 513

Query: 82  SIFFTDTSKRY 92
            ++  D S ++
Sbjct: 514 MVYLVDYSSQF 524


>GSVIVT01008193001 assembled CDS
          Length = 181

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 22  VCGRPLGLRFDKKTGNLYIADAYYGLMVVGPEGGLAIPLATHAGGKPILFANDLDLHE-N 80
           +CGRPLGL +D  +  LYIADAY+GL+ VG  GG A   AT A G P  F + LD+    
Sbjct: 90  ICGRPLGLGYDHSSNQLYIADAYFGLLAVGSNGGPATQAATSAEGVPFRFLSGLDVDPVT 149

Query: 81  GSIFFTDTSKRYD 93
           G+++ TD S  Y+
Sbjct: 150 GTVYITDFSTEYE 162