Jatropha Genome Database

JcCB0244361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0244361.10 + phase: 0 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010807001 assembled CDS                                       112   4e-26
GSVIVT01034451001 assembled CDS                                        64   2e-11
GSVIVT01037538001 assembled CDS                                        64   2e-11
GSVIVT01026131001 assembled CDS                                        63   4e-11
GSVIVT01007473001 assembled CDS                                        62   5e-11
GSVIVT01034422001 assembled CDS                                        62   6e-11
GSVIVT01033611001 assembled CDS                                        60   2e-10
GSVIVT01034669001 assembled CDS                                        60   2e-10
GSVIVT01034671001 assembled CDS                                        60   3e-10
GSVIVT01026127001 assembled CDS                                        59   4e-10
GSVIVT01008192001 assembled CDS                                        59   5e-10
GSVIVT01026130001 assembled CDS                                        59   5e-10
GSVIVT01026129001 assembled CDS                                        58   8e-10
GSVIVT01007474001 assembled CDS                                        57   3e-09
GSVIVT01008191001 assembled CDS                                        55   6e-09
GSVIVT01033612001 assembled CDS                                        52   5e-08
GSVIVT01008193001 assembled CDS                                        47   2e-06
GSVIVT01034449001 assembled CDS                                        47   3e-06

>GSVIVT01010807001 assembled CDS
          Length = 365

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 56/66 (84%)

Query: 59  MGSWPRDEKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETF 118
           M  WPRD + RLG GKLEFV+EVFGPESLEFD  G GPYTGLADGR+VRWMG+ VGWETF
Sbjct: 1   MEDWPRDNRSRLGQGKLEFVDEVFGPESLEFDIFGRGPYTGLADGRIVRWMGDSVGWETF 60

Query: 119 AVVTTN 124
           A+VT N
Sbjct: 61  ALVTPN 66


>GSVIVT01034451001 assembled CDS
          Length = 653

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           +LE  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 361 RLELPSRVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 409



 Score = 62.4 bits (150), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 31  LELPSGVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 78


>GSVIVT01037538001 assembled CDS
          Length = 328

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 64  RDEKGRLGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTT 123
           +D++  L   +++F+N+V GPES+ FD +G GPYTG+ADGR++ W GE   W  FA  + 
Sbjct: 11  KDDRNLLQKAEIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGE--AWSDFAYTSP 68

Query: 124 N 124
           N
Sbjct: 69  N 69


>GSVIVT01026131001 assembled CDS
          Length = 343

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 70  LGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           L   KLE  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 47  LKYNKLELPSRVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 99


>GSVIVT01007473001 assembled CDS
          Length = 312

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + VFGPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 31  LELPSGVFGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 78


>GSVIVT01034422001 assembled CDS
          Length = 340

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           +LE  +  +GPE+L FD  G GPYTG++DGR+++W G +VGW+ FAV +
Sbjct: 38  QLELPSGTYGPETLVFDCNGEGPYTGVSDGRILKWHGSEVGWKDFAVTS 86


>GSVIVT01033611001 assembled CDS
          Length = 272

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 78  VNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTT 123
           V   FGPES+ FD  G GPYTG+ADGRV++W G+  GW  FAV T+
Sbjct: 47  VTGAFGPESIAFDPKGEGPYTGVADGRVLKWEGDGRGWTDFAVTTS 92


>GSVIVT01034669001 assembled CDS
          Length = 291

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 70  LGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           L   KL+  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 43  LKYNKLKLPSGVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 95


>GSVIVT01034671001 assembled CDS
          Length = 322

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 70  LGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           L   KL+  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 26  LKYNKLKLPSWVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 78


>GSVIVT01026127001 assembled CDS
          Length = 315

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + V GPES+ FD  G+GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 24  LELPSGVSGPESIAFDCNGDGPYTGISDGRILKWQGSKHGWKEFAITS 71


>GSVIVT01008192001 assembled CDS
          Length = 1075

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           KL+  + + GPESL FD  G GPYTG++DGRV+++ G  VG+  FAV + N
Sbjct: 450 KLQLPSSITGPESLAFDLKGEGPYTGVSDGRVLKYQGPAVGFTDFAVTSPN 500



 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           L       GPE+L FD  G GPY  +ADGRV++W  E  G+  F V +
Sbjct: 33  LHLPTPTIGPEALAFDCSGAGPYASVADGRVLKWQAESAGFVDFTVAS 80



 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 30/49 (61%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           +L+    V GP SL FD    GPY G+ DGR++R+ G DVG+  FA  T
Sbjct: 775 QLQLPPNVTGPVSLAFDLTVGGPYAGVNDGRIIRYGGTDVGFTDFAFCT 823


>GSVIVT01026130001 assembled CDS
          Length = 273

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + V GPES+ FD  G+GPYTG++DG++++W G   GW+ FA+ +
Sbjct: 31  LELPSGVSGPESIAFDCNGDGPYTGISDGKILKWQGSKHGWKEFAITS 78


>GSVIVT01026129001 assembled CDS
          Length = 322

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + V GPES+ FD  G+GPYTG++DG++++W G   GW+ FA+ +
Sbjct: 31  LELPSGVSGPESIAFDCNGDGPYTGISDGKILKWQGSKHGWKEFAITS 78


>GSVIVT01007474001 assembled CDS
          Length = 334

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 75  LEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           LE  + V GPES+ FD   +GPYTG++DGR+++W G   GW+ FA+ +
Sbjct: 43  LELPSGVSGPESIAFDCNRDGPYTGISDGRILKWQGSKHGWKEFAITS 90


>GSVIVT01008191001 assembled CDS
          Length = 693

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 33/42 (78%)

Query: 83  GPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           GPES+ FDA G GPYTG++DGR+++++   VG+  FA+ ++N
Sbjct: 395 GPESIAFDAAGGGPYTGISDGRILKYVNGSVGFVEFAITSSN 436



 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           +L+    V GPE+L FD +G GPYTG++DGRV+++ G   G+  FA  T
Sbjct: 38  QLQLPPNVTGPEALAFDRLGGGPYTGVSDGRVLKYGGPSAGFTDFAYTT 86


>GSVIVT01033612001 assembled CDS
          Length = 365

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 81  VFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTT 123
             GPESL FD++G GPYTG++DGR+++W   +  W  FA  ++
Sbjct: 55  AIGPESLAFDSVGGGPYTGVSDGRIIKWEENEERWVDFATTSS 97


>GSVIVT01008193001 assembled CDS
          Length = 181

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 74  KLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVTTN 124
           KL     V  P S  FD +G GPYTG+ DGR+ ++ G  VG+  FA    N
Sbjct: 23  KLPLPKNVTSPYSFAFDQLGGGPYTGVTDGRIFKYGGPKVGFTEFAFTAPN 73


>GSVIVT01034449001 assembled CDS
          Length = 197

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 70  LGNGKLEFVNEVFGPESLEFDAIGNGPYTGLADGRVVRWMGEDVGWETFAVVT 122
           L   KLE    VF  ES+ F+  G GPYTG ++GR+++W G + G + FA+ +
Sbjct: 47  LKYNKLELPFAVFDLESIVFNCNGEGPYTGTSNGRILKWQGFEHGRKEFAITS 99