Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010324001 assembled CDS                                       322   4e-89
GSVIVT01001843001 assembled CDS                                       253   5e-68
GSVIVT01007522001 assembled CDS                                       200   3e-52

>GSVIVT01010324001 assembled CDS
          Length = 212

 Score =  322 bits (826), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 146/185 (78%), Positives = 173/185 (93%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           SGRP+LNLER+LDHDGHPLAIT+ DAV A+GVPPWNWRETPG+G E+QS+GGRVI+VK+ 
Sbjct: 28  SGRPTLNLERQLDHDGHPLAITSADAVTANGVPPWNWRETPGSGGESQSYGGRVISVKWG 87

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRR+G+DGT DAIKEAIKSAFRLRTKR FWLEDEDQIIR+LDRDMP+G+Y+LHLDEG+
Sbjct: 88  DYTRRIGIDGTADAIKEAIKSAFRLRTKRGFWLEDEDQIIRTLDRDMPLGSYSLHLDEGI 147

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
            +KVC YDES+H+PVHTEEK FYTE+D+RDFLTRRGW+ LRE +GYRN+DNMDDLRP +L
Sbjct: 148 GIKVCHYDESEHIPVHTEEKTFYTEEDFRDFLTRRGWSSLRELNGYRNIDNMDDLRPDSL 207

Query: 181 YRGVT 185
           YRG++
Sbjct: 208 YRGMS 212


>GSVIVT01001843001 assembled CDS
          Length = 241

 Score =  253 bits (645), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPE-NQSFGGRVITVKY 59
           SGR ++NLER LDHDG PLAITA DAVAASGVPPWNWRETPGNG E + S+GGRVI+VK+
Sbjct: 52  SGRSTVNLERPLDHDGDPLAITAADAVAASGVPPWNWRETPGNGGEGHSSYGGRVISVKW 111

Query: 60  LDYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEG 119
            +YTRR+G+DG   AIK+AIKSAF LRTKRAFWLEDED ++R LDRDMP+GNYTLHLDEG
Sbjct: 112 GEYTRRIGIDGNLGAIKDAIKSAFNLRTKRAFWLEDEDGVVRCLDRDMPLGNYTLHLDEG 171

Query: 120 LAVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGA 179
           + +KVCLYD+ D + V TEEK  YTE+D+RDFL RRG   LRE  GYR+   +DDL  GA
Sbjct: 172 VTIKVCLYDDPDRITVRTEEKTLYTEEDFRDFLARRGLIGLRELTGYRSFHTLDDLHSGA 231

Query: 180 LYRGV 184
           +Y+GV
Sbjct: 232 MYQGV 236


>GSVIVT01007522001 assembled CDS
          Length = 342

 Score =  200 bits (509), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/163 (58%), Positives = 124/163 (76%), Gaps = 2/163 (1%)

Query: 3   RPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQS-FGGRVITVKYLD 61
           +   N E+ +D+D H L I+  + VAA+G+PPWN +ETPG+G EN+S + GRVI V Y +
Sbjct: 177 KARFNSEKVMDYDQHSLGISEAEVVAANGLPPWNRKETPGSGTENESAYTGRVIWVNYGE 236

Query: 62  YTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGLA 121
            T+R+G+DG++D+IKEAI+S+F LRT RAFWLEDE++I+RSLDRDMP+  YTL LD GL 
Sbjct: 237 CTKRIGIDGSSDSIKEAIRSSFGLRTNRAFWLEDENEIVRSLDRDMPLTTYTLCLDAGLT 296

Query: 122 VKVCLYDE-SDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREF 163
           +K+CLYD+    +PV TEEK FY EDD RDFL  RGW  LR F
Sbjct: 297 IKICLYDQPCQLLPVRTEEKTFYCEDDLRDFLHHRGWMGLRRF 339