Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.20 + phase: 0 /partial
         (170 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004817001 assembled CDS                                       200   2e-52

>GSVIVT01004817001 assembled CDS
          Length = 596

 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 130/180 (72%), Gaps = 10/180 (5%)

Query: 1   MLQVAYADSDQAASKPTLSPDSPSS-------YQDLEEIAKKERQRIEELLRSKGMKYGS 53
           +L++A+A+SD  A K  L   S  S       Y +LEE A+K R R+EEL+R+KGMKYGS
Sbjct: 72  LLEIAHAESDPGADKTPLPSQSSPSPSESPPSYTNLEENARKLRDRLEELIRTKGMKYGS 131

Query: 54  YPRFTVALKGQKVTIKFQIPPACDVPQLIANLAMNLGLKVDERGGGSDMRLRAWDSAVAW 113
           YPRFTVALKGQKVTIKFQIPP C+VP LIA L   LG+KV+ER GGSDM +RAWDS +AW
Sbjct: 132 YPRFTVALKGQKVTIKFQIPPTCEVPCLIAKLVAQLGMKVEERSGGSDMIMRAWDSGIAW 191

Query: 114 QLTLSCPEKQKESHGD--NSSFAEP-EGDLCILLFRSLISRDKAEIEFIKSGRLSETELD 170
           QL LS   KQ ++  +  +S +    EGDLCIL+F+SLIS DKAEIEFIK G  S  ELD
Sbjct: 192 QLMLSRLGKQNKTGAEQVHSQYTNANEGDLCILIFQSLISADKAEIEFIKQGSFSSEELD 251