Jatropha Genome Database

JcCB0242781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.10 + phase: 1 /partial
         (352 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004818001 assembled CDS                                       185   3e-47

>GSVIVT01004818001 assembled CDS
          Length = 203

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 124/205 (60%), Gaps = 49/205 (23%)

Query: 39  PEFEFWMLQNPSFPEPNLLSADELFVDGVXXXXXXXXXXXXXXXXXXXXXXXXXXDFEPQ 98
           PEFEFWM++NPSFP+PNLLSADELFVDGV                               
Sbjct: 28  PEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHL------------------------- 62

Query: 99  LELGPQISYETIAAESAAPLTASKRWKDIFKKSDKKTATAQNQXXXXXXXXXXXXXXSQS 158
           L   P  S    +A  A+  TASKRWKDIFKK +KK+A                      
Sbjct: 63  LRHNPDSSKPISSAAPAS--TASKRWKDIFKKGEKKSAKN-------------------- 100

Query: 159 GATSGAELNINIWPFARSRSEGNSASRPRMFPGAPGARKVSSAPCSRSNSAGESKSRKWP 218
              S AELNINIWPF+RSRS GN+A RPRM  G  G RKVSSAPCSRSNSAGESKSRKWP
Sbjct: 101 --ASSAELNINIWPFSRSRSAGNNAVRPRMAAGGAGTRKVSSAPCSRSNSAGESKSRKWP 158

Query: 219 TSPGRGGVHLGRSSPVWQVRRGAAG 243
           +SPGR GVHLGRSSPVWQVRRG + 
Sbjct: 159 SSPGRPGVHLGRSSPVWQVRRGGSA 183