Jatropha Genome Database

JcCB0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0240711.10 + phase: 2 /partial
         (71 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010169001 assembled CDS                                       111   6e-26
GSVIVT01031739001 assembled CDS                                        71   8e-14

>GSVIVT01010169001 assembled CDS
          Length = 308

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 58/60 (96%)

Query: 1   YEVVQTLDKQRHRVEGPIYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVR 60
           YEV+ TLDK++H VEGPIYYY+FNTLL+CLLVLHIYWWVL+YRMLVKQ+QARGQ+S+DVR
Sbjct: 238 YEVILTLDKEKHAVEGPIYYYLFNTLLFCLLVLHIYWWVLMYRMLVKQVQARGQLSDDVR 297


>GSVIVT01031739001 assembled CDS
          Length = 311

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 18  IYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVRSDSEGED 67
           + YYVFNT+L  LLV HIYWW+LI  M+++Q++ RGQ+ ED+RSDSE ++
Sbjct: 262 LLYYVFNTMLLTLLVFHIYWWILICSMIMRQLKNRGQVGEDIRSDSEDDE 311