Jatropha Genome Database

JcCB0238621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0238621.10 - phase: 0 /pseudo/partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035914001 assembled CDS                                        69   1e-12

>GSVIVT01035914001 assembled CDS
          Length = 462

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 13/119 (10%)

Query: 19  VHETLKGKVRHGTGSLTTWFNKEKANRFRNTKSPGRISMAIAVNVSRFEGITMAPLIQFL 78
           + E  KGK+  G+   +++  KEK N F  TKS GRI+MAIAVN SRFEG+TMAP    L
Sbjct: 15  LQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIAVNTSRFEGVTMAPPDPIL 74

Query: 79  VYQKLFEQTQMIXNSTLELG-------PTELKSYILMFSMLLRRQRILCWRGVNIKRYP 130
              + F       NS ++L          EL+ Y+L  +++ + + ++  RG N +  P
Sbjct: 75  GVSEAFRAD----NSEMKLNLGVGAYRTEELQPYVL--NVVKKAENLMLERGENKEYLP 127