Jatropha Genome Database

JcCB0238051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0238051.10 - phase: 1 /partial
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018220001 assembled CDS                                       171   2e-43
GSVIVT01015328001 assembled CDS                                        84   2e-17

>GSVIVT01018220001 assembled CDS
          Length = 552

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 8/156 (5%)

Query: 1   EHSPRHSGNSTHAQELVTFSSAQTEEFPDGDCASSRQNHSTFPEPSTSIKPSTSATAAPS 60
           ++S   + ++ + QEL TF S QT E+ D     SR ++ST  E   +       TA P 
Sbjct: 113 DYSVEPAYSAVNEQELTTFPSEQTREYLDSIHRPSRGSYSTLYESYDT------ETATPP 166

Query: 61  IQ--ITRTSSDGPSQNNSAIVPSSHSGQNGISIFQGLIERARRTVRGSADDIGWMQRASG 118
           +   ITR S    SQNN A+V + H  QNGISIFQGLI+RARRTVRGSADDIGW+QRA G
Sbjct: 167 VPDGITRNSPGDTSQNNGALVVTDHPHQNGISIFQGLIDRARRTVRGSADDIGWIQRAPG 226

Query: 119 MPPVEDGTGRFMEVLDNIRHGLHKLPNSMVYLLVPG 154
           MPPVEDGT RFME++D IRHG+H+LPNSM+YLLVPG
Sbjct: 227 MPPVEDGTDRFMEIIDEIRHGVHRLPNSMIYLLVPG 262


>GSVIVT01015328001 assembled CDS
          Length = 536

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 93  QGLIERARRTVRGSADDIGWMQRASGMPPVEDGTGRFMEVLDNIRHGLHKLPNSMVYLLV 152
           + +I R + T+ GS+DDIGW+Q   G+ PVEDGT RF+E+L  IR+G H LPNS VYLL+
Sbjct: 183 RSIISRVQTTLHGSSDDIGWLQCTPGVAPVEDGTARFLELLREIRNGKHTLPNSYVYLLI 242

Query: 153 PG 154
           PG
Sbjct: 243 PG 244