Jatropha Genome Database

JcCB0237901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237901.10 + phase: 0 /pseudo/partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007745001 assembled CDS                                       194   1e-50
GSVIVT01007742001 assembled CDS                                       189   6e-49
GSVIVT01013736001 assembled CDS                                       175   1e-44
GSVIVT01032466001 assembled CDS                                       174   2e-44
GSVIVT01009165001 assembled CDS                                       129   7e-31
GSVIVT01015633001 assembled CDS                                       125   1e-29
GSVIVT01032226001 assembled CDS                                       112   1e-25
GSVIVT01007741001 assembled CDS                                        96   1e-20
GSVIVT01026172001 assembled CDS                                        52   2e-07

>GSVIVT01007745001 assembled CDS
          Length = 259

 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 106/140 (75%)

Query: 57  VFLQLRYSGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKI 116
            F QLRYSGVGA IEYAV HL VENIL+IGHSRCGGI+ LMSLP DG+TSNDFIDDWVKI
Sbjct: 120 AFNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIQALMSLPADGTTSNDFIDDWVKI 179

Query: 117 GLPAKRKVLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTLRGGYYDF 176
           GLPAK KV  E     F EQC+ CE+ESVN SL+N+ +YPYV+AA+    L L GGYYDF
Sbjct: 180 GLPAKAKVESEWSDATFEEQCEHCEKESVNLSLVNLLSYPYVRAALANRALKLMGGYYDF 239

Query: 177 VNGIFELWEVKDCITQPIPI 196
           VNG F LW+    IT  I I
Sbjct: 240 VNGTFGLWKADFDITPEIII 259


>GSVIVT01007742001 assembled CDS
          Length = 261

 Score =  189 bits (481), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 106/147 (72%)

Query: 50  HLTRLSFVFLQLRYSGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDF 109
           ++  L   F QLRYSGVGA IEYAV HL VENIL+IGHSRCGGIE LMSLP DG+TSNDF
Sbjct: 115 NIANLVPAFNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIEALMSLPADGTTSNDF 174

Query: 110 IDDWVKIGLPAKRKVLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTL 169
           IDDWVKI LPAK KV  E     F +QC+   RESVN SL+N+ +YPYV+AA+    L L
Sbjct: 175 IDDWVKIALPAKAKVESEWSDATFEQQCEYLGRESVNLSLVNLLSYPYVQAALANKALKL 234

Query: 170 RGGYYDFVNGIFELWEVKDCITQPIPI 196
            GGYYDFVNG F LW+    I  PI I
Sbjct: 235 MGGYYDFVNGTFGLWKADFDIKPPIII 261


>GSVIVT01013736001 assembled CDS
          Length = 256

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 104/136 (76%)

Query: 60  QLRYSGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKIGLP 119
           Q +YSGVGAAIEYAV HL VENI++IGHS CGGI+ LMS+P DG+T++DFI+ WV+I LP
Sbjct: 120 QTKYSGVGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASDFIEQWVQICLP 179

Query: 120 AKRKVLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTLRGGYYDFVNG 179
           AK KV  E+  L F EQC  CE+E+VN SL N+ TYP+V+ A+ K  L L+G +YDFVNG
Sbjct: 180 AKSKVKTEYTDLTFAEQCTNCEKEAVNVSLGNLLTYPFVREAVVKKTLALKGAHYDFVNG 239

Query: 180 IFELWEVKDCITQPIP 195
            FELW  +  ++ P+P
Sbjct: 240 SFELWSFEVNLSPPLP 255


>GSVIVT01032466001 assembled CDS
          Length = 335

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 100/128 (78%)

Query: 57  VFLQLRYSGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKI 116
            + ++RYSGVG+A+EYAV HL VE+I++IGHS CGGI+ LMS P DG++S DFI+DWVKI
Sbjct: 185 AYDKIRYSGVGSAVEYAVLHLKVEHIVVIGHSSCGGIKGLMSFPFDGTSSTDFIEDWVKI 244

Query: 117 GLPAKRKVLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTLRGGYYDF 176
           GLPAK KV+ E   L F EQC  CE+E+VN SL N+ +YP+V+  + K  LTL+GGYYDF
Sbjct: 245 GLPAKSKVVAECGDLPFPEQCAYCEKEAVNVSLGNLLSYPFVREGLVKKTLTLKGGYYDF 304

Query: 177 VNGIFELW 184
           V G FELW
Sbjct: 305 VKGTFELW 312


>GSVIVT01009165001 assembled CDS
          Length = 328

 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 64  SGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKIGLPAKRK 123
           S   AA+E+AV  L VENIL+IGHS C GIETL+ + +D   S+ F+++WV  G  AK +
Sbjct: 184 SETNAALEFAVNTLEVENILVIGHSSCAGIETLVRM-RDDVNSSSFVENWVANGKVAKLR 242

Query: 124 VLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTLRGGYYDFVNGIFEL 183
                 HL FY+QCK CE+ES+N SL+N+ TYP+++    KG L++ GGYYDF+N  FE 
Sbjct: 243 TKAAAGHLGFYQQCKYCEKESINHSLLNLLTYPWIEDRERKGLLSIHGGYYDFLNCTFEK 302

Query: 184 WEV 186
           W +
Sbjct: 303 WTI 305


>GSVIVT01015633001 assembled CDS
          Length = 301

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)

Query: 66  VGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKIGLPAKRKVL 125
             AA+E+AV  L VENIL+IGHS CGGI  LM + ++  +S+ FI  WV +G  AK +  
Sbjct: 165 TNAALEFAVNTLEVENILVIGHSCCGGIRALMGMEEEVDSSS-FIQSWVVVGKNAKLRAK 223

Query: 126 EEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKLTLRGGYYDFVNGIFELW 184
                L F +QC+ CE+ES+N SL+N+ TYP++K  +++G L++ GGYYDFVN  FE W
Sbjct: 224 ATASKLSFDQQCRNCEKESINCSLLNLLTYPWIKERVERGMLSIHGGYYDFVNCTFEKW 282


>GSVIVT01032226001 assembled CDS
          Length = 377

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 56/66 (84%)

Query: 57  VFLQLRYSGVGAAIEYAVAHLHVENILIIGHSRCGGIETLMSLPKDGSTSNDFIDDWVKI 116
            F QLRYSGVGA IEYAV +L VENILII HSRCGG E LMSLP DG+TSNDFIDDWVKI
Sbjct: 305 AFNQLRYSGVGAVIEYAVKYLEVENILIIRHSRCGGTEALMSLPADGTTSNDFIDDWVKI 364

Query: 117 GLPAKR 122
            LPA++
Sbjct: 365 ALPARQ 370


>GSVIVT01007741001 assembled CDS
          Length = 169

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 56/79 (70%)

Query: 108 DFIDDWVKIGLPAKRKVLEEHPHLDFYEQCKICERESVNFSLINIQTYPYVKAAMDKGKL 167
           DFIDDWVKIGLPAK KV  E     F + C+ CE+ES N SL+N+ + PY +AA+ +  L
Sbjct: 74  DFIDDWVKIGLPAKAKVKSEWGDKSFEQHCQYCEKESGNSSLVNLLSDPYARAAVAERDL 133

Query: 168 TLRGGYYDFVNGIFELWEV 186
            L GGYY+FV+G F LWEV
Sbjct: 134 KLVGGYYNFVHGTFGLWEV 152


>GSVIVT01026172001 assembled CDS
          Length = 31

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 97  MSLPKDGSTSNDFIDDWVKIGLPAKRKVLEE 127
           MSLP +G+TS DFID+WVKIGLP K KV  E
Sbjct: 1   MSLPANGATSKDFIDNWVKIGLPTKAKVKSE 31