Jatropha Genome Database

JcCB0237641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237641.10 - phase: 0 
         (371 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017730001 assembled CDS                                       322   2e-88
GSVIVT01009654001 assembled CDS                                       321   4e-88
GSVIVT01023957001 assembled CDS                                       210   9e-55
GSVIVT01014066001 assembled CDS                                       120   1e-27
GSVIVT01019025001 assembled CDS                                       112   2e-25
GSVIVT01019299001 assembled CDS                                        86   4e-17

>GSVIVT01017730001 assembled CDS
          Length = 254

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/288 (54%), Positives = 200/288 (69%), Gaps = 34/288 (11%)

Query: 84  MRQKAASINQALEAAVSVREPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNESMAMP 143
           M +KA S+NQAL+ A+ +REP +IH++MRYSLL GGKR+ P +C++ACELVGG ES AMP
Sbjct: 1   MLEKAKSVNQALDTAIPLREPLEIHKAMRYSLLDGGKRIHPIVCISACELVGGQESTAMP 60

Query: 144 AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGENVAVLAGDALLAFAFEHIAVS 203
             CAVEM+H +SL+ DDLPCMDNDD+RRGKP+NH  FGE+                    
Sbjct: 61  VVCAVEMLHVVSLMQDDLPCMDNDDIRRGKPSNHKAFGES-------------------- 100

Query: 204 TLNVPPARVVRAIGELAKAIGAEGLVAGQVVDICSEGLSEVDLEKLEFIHVHKTAKXXXX 263
                         ELA++IG++GLVAGQ +D+ SEG  E+ LE LE IH++K       
Sbjct: 101 --------------ELARSIGSQGLVAGQFLDLSSEGSPEIGLEGLESIHINKAGPLLEA 146

Query: 264 XXXXXXXXXXXTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVT 323
                      + E++E LRK+ R +GLL+QVVDDILD+TKS+QELGKTAGKDLVADKVT
Sbjct: 147 SAVIGAMLGGGSSEQMEILRKFGRCVGLLYQVVDDILDITKSTQELGKTAGKDLVADKVT 206

Query: 324 YPKLLGIEKSREFAQKLNKEAQEQLAGFDHEKAAPLIALANYIAYRQN 371
           YPKL+GIEKSREFA+KLN +A + L+ FD EKAA L+A+ N+  YRQN
Sbjct: 207 YPKLVGIEKSREFAEKLNGDAWDMLSEFDQEKAASLLAMVNFATYRQN 254


>GSVIVT01009654001 assembled CDS
          Length = 301

 Score =  321 bits (822), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/294 (57%), Positives = 197/294 (67%), Gaps = 60/294 (20%)

Query: 78  FDFKSYMRQKAASINQALEAAVSVREPAKIHESMRYSLLAGGKRVRPALCLAACELVGGN 137
           F+FK YM QKA+S+++AL+ AV V+ P KIHE+MRYSLLAGGKR                
Sbjct: 68  FNFKDYMIQKASSVHKALDEAVYVKSPIKIHEAMRYSLLAGGKR---------------- 111

Query: 138 ESMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGENVAVLAGDALLAFAF 197
            S AMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNH VFGE+VAVLAGD+LLAFAF
Sbjct: 112 -SNAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDSLLAFAF 170

Query: 198 EHIAVSTLNVPPARVVRAIGELAKAIGAEGLVAGQVVDICSEGLSEVDLEKLEFIHVHKT 257
           EH+A +T  V  +R+V A+GELAK+IGAEGLVAGQVVDI S G S+V L++LEFIH+HKT
Sbjct: 171 EHLATATSGVSSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGLDQLEFIHIHKT 230

Query: 258 AKXXXXXXXXXXXXXXXTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDL 317
           A                +DEE                                       
Sbjct: 231 AALLEAAVVLGALLGGGSDEE--------------------------------------- 251

Query: 318 VADKVTYPKLLGIEKSREFAQKLNKEAQEQLAGFDHEKAAPLIALANYIAYRQN 371
                TYPKL+G+EKSREFA+ LNKEA+EQL+GFD EKAAPLIALA+YIAYRQN
Sbjct: 252 ----ATYPKLMGLEKSREFAENLNKEAKEQLSGFDLEKAAPLIALADYIAYRQN 301


>GSVIVT01023957001 assembled CDS
          Length = 1187

 Score =  210 bits (535), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 166/297 (55%), Gaps = 44/297 (14%)

Query: 78  FDFKSYMRQKAASINQALEAAVSVREPAKIHESMRYSLLA-GGKRVRPALCLAACELVGG 136
           FD +SY     + IN  LE A+ V+ P +I+E+MRYS+LA GGKR  P +C+A CEL GG
Sbjct: 305 FDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGKRAPPVMCVAVCELFGG 364

Query: 137 NESMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGENVAVLAGDALLAFA 196
           +   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G ++A+LAGDAL    
Sbjct: 365 DRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLG 424

Query: 197 FEHIAVSTLN--VPPARVVRAIGELAKAIGAEGLVAGQVVDICSEGLSEVDLEKLEFIHV 254
           F HI   T +  VP  +++R I E+A+++G+ G+ AGQ +D+  EG        ++F+  
Sbjct: 425 FRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDL--EGAP----NSVDFVQR 478

Query: 255 HKTAKXXXXXXXXXXXXXXXTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAG 314
            K  +                D+++ +LR+Y R +G+L+QVVDD                
Sbjct: 479 KKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDD---------------- 522

Query: 315 KDLVADKVTYPKLLGIEKSREFAQKLNKEAQEQLAGFDH--EKAAPLIALANYIAYR 369
                            K+ E A++L  +A+ +L+GFD   +   PL +  ++ A R
Sbjct: 523 -----------------KAMEVAEELRAKAKRELSGFDKYGDSVVPLYSFVDFAAER 562


>GSVIVT01014066001 assembled CDS
          Length = 420

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 136/292 (46%), Gaps = 31/292 (10%)

Query: 60  TREEETLQDEQNNGSTPPFDFKSYMRQKAAS-------------INQALEAAVSVREPAK 106
           TR  ETL +    G  P  D K       +              +NQ L++ V    P  
Sbjct: 68  TRAPETLLNGVGQGPPPALDVKKESSSSISLASFFEVVADDLQILNQNLQSIVGAENPV- 126

Query: 107 IHESMRYSLLAGGKRVRPALCL----AACELVGGNESMAMPAACA--VEMIHTMSLIHDD 160
           +  +      AGGKR+RPAL      A  E+ G  +        A  +EMIHT SLIHDD
Sbjct: 127 LMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLKDLTIKHRRLAEIIEMIHTASLIHDD 186

Query: 161 LPCMDNDDLRRGKPTNHIVFGENVAVLAGDALLAFAFEHIAVSTLNVPPARVVRAIGELA 220
           +  +D  D+RRGK T H ++G  VAVLAGD + A +  ++A    N+    V++ I ++ 
Sbjct: 187 V--LDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLA----NLENLEVIKLISQVI 240

Query: 221 KAIGAEGLVAGQVVDICSEGLSEVDLEKLEFIHVHKTAKXXXXXXXXXXXXXXXTDEEVE 280
           K   +  +     +  C   L E  L+       +KTA                     E
Sbjct: 241 KDFASGEIKQASSLFDCELELEEYLLKSF-----YKTASLIAASTKGAAIFSGVDSNIAE 295

Query: 281 KLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 332
           ++ +Y R++GL FQ+VDDILD T+S+++LGK AG DL    +T P +  +EK
Sbjct: 296 QMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEK 347


>GSVIVT01019025001 assembled CDS
          Length = 235

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 62/64 (96%)

Query: 308 ELGKTAGKDLVADKVTYPKLLGIEKSREFAQKLNKEAQEQLAGFDHEKAAPLIALANYIA 367
           +LGKTAGKDLVADK+TYPKLLGIEKSRE A++LNK+A++QL+GFD +KAAPLIAL+NYIA
Sbjct: 172 DLGKTAGKDLVADKLTYPKLLGIEKSRELAEQLNKDAKDQLSGFDPDKAAPLIALSNYIA 231

Query: 368 YRQN 371
           YRQN
Sbjct: 232 YRQN 235



 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 1   MTSVNLGSWFHSCCVLNQATRSRSNSKSFSLPFNPLKRLSIPLFYENSKRPSSSISAIIT 60
           M +VNLG+W H+  V N   R +S   S  L  +PLK  S P+  + S RP S + A++T
Sbjct: 39  MNTVNLGTWVHTSYVFNHGGRLKSPVLSRML--HPLKNPSFPMLSQRSGRPMSLV-AVLT 95

Query: 61  REEETLQDEQNNGSTPPFDFKSYMRQKAASINQALEAAVSVREPAKIHESMRYSLLAGGK 120
           +EE     +      P F+F +Y+  KA S+N+AL+ AV +REP K+HESMRYSLLAGGK
Sbjct: 96  KEEMVRGGDTPEEEKPAFNFNAYILDKANSVNKALDDAVPIREPVKVHESMRYSLLAGGK 155

Query: 121 R 121
           R
Sbjct: 156 R 156


>GSVIVT01019299001 assembled CDS
          Length = 422

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 138/308 (44%), Gaps = 47/308 (15%)

Query: 53  SSISAIITREEETLQDEQNNGSTPPFDFKSYMRQKAASINQALEAAVSVREPAKIHESMR 112
           S +   I +E  +L +EQ +    PF   S +  + + +   L + V V E  K+  +  
Sbjct: 64  SGVRHQIHQESSSLAEEQLD----PF---SLVADELSLLADRLRSMV-VAEVPKLASAAE 115

Query: 113 YSLLAG--GKRVRPA-LCLAACELVGGNESMAMPAACAV-------------------EM 150
           Y    G  GKR RP  L L A  L   N  +  PA   V                   EM
Sbjct: 116 YFFKMGVEGKRFRPTVLLLMATAL---NVPLPRPALAEVPETLSTELRTRQQCIAEITEM 172

Query: 151 IHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGENVAVLAGDALLAFAFEHIAVSTLNVPPA 210
           IH  SL+HDD+  +D+ + RRG  + +I+ G  VAVLAGD LL+ A   +A+++L     
Sbjct: 173 IHVASLLHDDV--LDDAETRRGIGSLNIMMGNKVAVLAGDFLLSRAC--VALASL----- 223

Query: 211 RVVRAIGELAKAIGAEGLVAGQVVDICSEGLSEVDLEKLEFIHVHKTAKXXXXXXXXXXX 270
           +    +  LA  +  E LV G+ + + S     V +E       +KTA            
Sbjct: 224 KNTEVVSLLATVV--EHLVTGETMQMTSTSEQRVSMEYYLQKTYYKTASLISNSCKAIAL 281

Query: 271 XXXXTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGI 330
               T E      +Y +++GL FQ++DD+LD T +S  LGK +  D+    +T P L  I
Sbjct: 282 LAGQTAEVSMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAI 341

Query: 331 EKSREFAQ 338
           E   EF Q
Sbjct: 342 E---EFPQ 346