Jatropha Genome Database
- JcCB0236531.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0236531.10 - phase: 2 /partial
(65 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01021186001 assembled CDS 93 2e-20
GSVIVT01007554001 assembled CDS 75 6e-15
GSVIVT01028183001 assembled CDS 65 8e-12
GSVIVT01000545001 assembled CDS 64 2e-11
GSVIVT01027038001 assembled CDS 60 2e-10
GSVIVT01008868001 assembled CDS 60 3e-10
GSVIVT01011071001 assembled CDS 59 3e-10
GSVIVT01031154001 assembled CDS 59 3e-10
GSVIVT01008869001 assembled CDS 59 4e-10
GSVIVT01000056001 assembled CDS 59 4e-10
GSVIVT01000546001 assembled CDS 59 5e-10
GSVIVT01000547001 assembled CDS 58 1e-09
GSVIVT01031290001 assembled CDS 57 1e-09
GSVIVT01028184001 assembled CDS 57 3e-09
GSVIVT01000548001 assembled CDS 56 3e-09
GSVIVT01010296001 assembled CDS 55 6e-09
GSVIVT01008870001 assembled CDS 53 3e-08
GSVIVT01000007001 assembled CDS 51 1e-07
GSVIVT01028185001 assembled CDS 51 1e-07
GSVIVT01000005001 assembled CDS 46 3e-06
GSVIVT01032473001 assembled CDS 46 5e-06
>GSVIVT01021186001 assembled CDS
Length = 1124
Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 46/52 (88%)
Query: 1 CCGGGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCGGGG YNFNN ARCGH+GSKAC +PS+YANWDGIHLTE AY+IIA LIN
Sbjct: 652 CCGGGGPYNFNNSARCGHIGSKACNDPSSYANWDGIHLTEGAYKIIATCLIN 703
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 1 CCGGGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPPL 60
CCGGGG YN+N+ CG++ + +C +PS Y +WDG+HLTEAAY+ IA GL+ ++ PPL
Sbjct: 298 CCGGGGPYNYNSSVECGNLPATSCDDPSLYVSWDGLHLTEAAYKWIANGLLEEPYTFPPL 357
>GSVIVT01007554001 assembled CDS
Length = 411
Score = 75.1 bits (183), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 CCGGGGS-YNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPP 59
CCG GG YNF+ FA CG + AC NPS Y NWDG+HLTEA Y+++A ++G F PP
Sbjct: 340 CCGSGGDPYNFDVFATCGSSSASACPNPSQYINWDGVHLTEAMYKVVANSFLHGGFCHPP 399
Query: 60 L 60
Sbjct: 400 F 400
>GSVIVT01028183001 assembled CDS
Length = 364
Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 CCGGGGS-YNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPP 59
CCG GG YNF+N +CG VG C S Y +WDGIH T+ A + +A +++ +FSTPP
Sbjct: 297 CCGHGGPPYNFDNLIQCGGVGFSVCEEGSKYVSWDGIHYTQLANQFVASKILSTNFSTPP 356
Query: 60 L 60
L
Sbjct: 357 L 357
>GSVIVT01000545001 assembled CDS
Length = 449
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 1 CCGGGGSYNFNNFARCGH---------VGSKACVNPSTYANWDGIHLTEAAYRIIAMGLI 51
CCG GG YN+N +CG V +K+C NP +WDG+H TEAA + I ++
Sbjct: 370 CCGHGGKYNYNQAFKCGAKIKVGGKEVVIAKSCENPRVRISWDGVHFTEAANKWIFDRIV 429
Query: 52 NGSFSTPPL 60
+GSFS PP+
Sbjct: 430 DGSFSDPPI 438
>GSVIVT01027038001 assembled CDS
Length = 383
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 1 CCG-GGGSYNFNNFARCGH--------VGSKACVNPSTYANWDGIHLTEAAYRIIAMGLI 51
CCG GGG+YNF+ CG V ++AC +P +Y +WDG+H TEAA +I+ ++
Sbjct: 303 CCGHGGGAYNFDPKIFCGRKQVVNGRNVTAEACSDPQSYVSWDGVHSTEAANKIVTEAIL 362
Query: 52 NGSFSTPPLTKFPL 65
G++ PP FP+
Sbjct: 363 KGNYFDPP---FPI 373
>GSVIVT01008868001 assembled CDS
Length = 390
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCGHV----GSK----ACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN+ N A CG GS+ +C PS NWDG+H TEAA + + + +
Sbjct: 311 CCGYGGEYNYGNDASCGSTITVNGSQIFVGSCERPSLRVNWDGVHYTEAANKFVFDQISS 370
Query: 53 GSFSTPPL 60
G+FS PPL
Sbjct: 371 GAFSDPPL 378
>GSVIVT01011071001 assembled CDS
Length = 389
Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 1 CCG-GGGSYNFNNFARCGH--------VGSKACVNPSTYANWDGIHLTEAAYRIIAMGLI 51
CCG GG NF+N CG V +K C N + Y NWDG H TEAA ++ ++
Sbjct: 300 CCGYGGPPLNFDNRIACGQTKSLNGSLVTAKPCDNTTEYVNWDGNHYTEAANLYVSSQIL 359
Query: 52 NGSFSTPPLTKFPL 65
G FS PPLT+F +
Sbjct: 360 TGKFSDPPLTEFTI 373
>GSVIVT01031154001 assembled CDS
Length = 374
Score = 59.3 bits (142), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 CCGGGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLI 51
CCG GG YN++ CG G +AC +P +WDGIHLT+ A +IA LI
Sbjct: 313 CCGAGGEYNYDRARTCGAPGVQACPDPDRLVHWDGIHLTQKASMLIAKWLI 363
>GSVIVT01008869001 assembled CDS
Length = 411
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCGHV----GSK----ACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN++N A CG GS+ +C PS NWDG+H TEAA + + + +
Sbjct: 332 CCGYGGEYNYSNDAGCGSTITVNGSQIFVGSCERPSLRVNWDGVHYTEAANKFVFDQISS 391
Query: 53 GSFSTPPL 60
G+FS PPL
Sbjct: 392 GAFSDPPL 399
>GSVIVT01000056001 assembled CDS
Length = 390
Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCGHV----GSK----ACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN+ N A CG GS+ +C PS NWDGIH TEAA + + + +
Sbjct: 311 CCGYGGEYNYGNDAGCGSTITVNGSQIFVGSCERPSLRVNWDGIHYTEAANKFVFDQISS 370
Query: 53 GSFSTPPL 60
G+FS PPL
Sbjct: 371 GAFSDPPL 378
>GSVIVT01000546001 assembled CDS
Length = 383
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCG--------HVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN+N CG V +C +PS NWDG+H TEAA + I ++
Sbjct: 304 CCGHGGKYNYNIHVGCGGKVKVDGKEVVVGSCKDPSVKINWDGVHFTEAANKWIFDKIVG 363
Query: 53 GSFSTPPL 60
G FS PP+
Sbjct: 364 GEFSDPPI 371
>GSVIVT01000547001 assembled CDS
Length = 381
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCG--------HVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN+N CG V +C +P+ NWDGIH TEAA + + ++
Sbjct: 305 CCGPGGKYNYNVKVGCGWKGVVDGREVEGTSCKDPTVKINWDGIHYTEAANKWVFDQIVG 364
Query: 53 GSFSTPPL 60
G+FS PP+
Sbjct: 365 GAFSDPPV 372
>GSVIVT01031290001 assembled CDS
Length = 433
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 CCG-GGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPP 59
CCG GG YN+N CG G + C S + +WDGIH TEAA I+A +++ +STP
Sbjct: 365 CCGYGGPPYNYNIRVTCGQPGHQVCKEGSQFVSWDGIHFTEAANTIVASKILSMDYSTPR 424
Query: 60 L 60
+
Sbjct: 425 I 425
>GSVIVT01028184001 assembled CDS
Length = 369
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 CCG-GGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPP 59
CCG GG YNF+ +C GS C S Y +WDG+H TEAA +A +++ +S+PP
Sbjct: 301 CCGYGGPPYNFDPKFQCTAPGSNVCEEGSKYISWDGVHYTEAANAFVASKIVSTDYSSPP 360
Query: 60 L 60
L
Sbjct: 361 L 361
>GSVIVT01000548001 assembled CDS
Length = 384
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 1 CCGGGGSYNFNNFARCG--------HVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG G F CG V +C NPS Y +WDG+H T+AA + +A ++N
Sbjct: 307 CCGQNG-----KFRECGKKAVVNGTEVDGASCTNPSEYVSWDGVHYTDAANQWVAGHILN 361
Query: 53 GSFSTPPL 60
GS S PPL
Sbjct: 362 GSLSDPPL 369
>GSVIVT01010296001 assembled CDS
Length = 221
Score = 55.1 bits (131), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1 CCG-GGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPP 59
CCG G G NF+ + CG ++ C +PS + WDG+HLTEA + ++A L+N + P
Sbjct: 148 CCGCGKGDLNFDLRSLCGARNTRVCSDPSKHITWDGVHLTEAMHHVLADLLLNKGYCKPS 207
Query: 60 LTKF 63
+
Sbjct: 208 FDQL 211
>GSVIVT01008870001 assembled CDS
Length = 205
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCG--------HVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
CCG GG YN+NN CG + AC P ANWDGIH TEAA + + + +
Sbjct: 126 CCGYGGKYNYNNEVVCGGTITVNGTDIFIGACDRPWVRANWDGIHYTEAANKFVFDRISS 185
Query: 53 GSFSTPPL 60
G+ + PP+
Sbjct: 186 GACTDPPV 193
>GSVIVT01000007001 assembled CDS
Length = 380
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 1 CCGGGG-SYNFNNFARCG--------HVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLI 51
CCG GG N+++ CG + +K C + + Y NWDGIH +EAA + ++ ++
Sbjct: 300 CCGYGGLPLNYDSRVPCGKTKVVNGTEITAKGCSDSTEYVNWDGIHYSEAANQYVSSQIL 359
Query: 52 NGSFSTPPLT-KFPL 65
G +S PP + K P
Sbjct: 360 TGKYSDPPFSDKMPF 374
>GSVIVT01028185001 assembled CDS
Length = 368
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 CCG-GGGSYNFNNFARCGHVGSKACVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTP 58
CCG GG N++ A CG G C N S+ WDG+H TEAA ++ +++G +STP
Sbjct: 298 CCGYGGPPNNYDRKATCGQPGYSICKNASSSIVWDGVHYTEAANQVSTASILSGHYSTP 356
>GSVIVT01000005001 assembled CDS
Length = 119
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 1 CCGGGGSYNFNNFARCGH--------VGSKACVNPSTYANWDGIHLTEAAYRIIAMGLIN 52
C GG +N+ CG V K C + + + NWDGIH T+A+ + ++ ++
Sbjct: 52 CGYGGAPLKYNHQVNCGKGRVVEGTSVTDKGCSDSTEHVNWDGIHYTQASNQYVSSQILT 111
Query: 53 GSFSTPPL 60
G +S PP
Sbjct: 112 GKYSDPPF 119
>GSVIVT01032473001 assembled CDS
Length = 378
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 24 CVNPSTYANWDGIHLTEAAYRIIAMGLINGSFSTPPL 60
C +PS + +WDG H +EAA +A ++NGSFS PP+
Sbjct: 334 CEHPSRHISWDGTHYSEAANEWVAKAILNGSFSDPPI 370